View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8893_low_7 (Length: 658)

Name: NF8893_low_7
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8893_low_7
NF8893_low_7
[»] chr3 (3 HSPs)
chr3 (268-640)||(51420906-51421280)
chr3 (268-385)||(51421562-51421678)
chr3 (296-362)||(49287770-49287838)
[»] chr1 (2 HSPs)
chr1 (268-640)||(38931757-38932131)
chr1 (268-385)||(38931359-38931475)
[»] chr8 (5 HSPs)
chr8 (451-640)||(37562748-37562937)
chr8 (268-369)||(13934955-13935056)
chr8 (268-385)||(37562340-37562456)
chr8 (314-393)||(37562938-37563017)
chr8 (298-326)||(1487662-1487690)
[»] chr5 (4 HSPs)
chr5 (134-264)||(38690555-38690685)
chr5 (151-231)||(38703425-38703507)
chr5 (303-351)||(32944404-32944452)
chr5 (291-323)||(38064839-38064871)
[»] chr2 (1 HSPs)
chr2 (296-380)||(4386088-4386173)
[»] chr4 (1 HSPs)
chr4 (303-351)||(33370795-33370843)
[»] chr7 (3 HSPs)
chr7 (303-351)||(32548591-32548641)
chr7 (296-348)||(35770357-35770411)
chr7 (291-323)||(8464465-8464497)


Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 268 - 640
Target Start/End: Original strand, 51420906 - 51421280
Alignment:
Q  268 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 367  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51420906 aagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 51421005  T
Q  368 aaacccataaccagcaactaatcaaaaccaccgtcccaactctttattgttaatttatttaatttcccttgtctctccttcatccttattttattttctt 467  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51421006 aaacccataaccagcaactcatcaaaaccaccgtcccaactctttattgttaatttatttaatttcccttgtctctccttcatccttattttattttctt 51421105  T
Q  468 tgctacaatgtattaatcccaatccaaaacattgatcatggttttgattgttcattattatatatgaagtgaatatcagatttggagcaatctaagcttc 567  Q
    || | |||||||||||||| |||| ||||||||  ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  51421106 tgatgcaatgtattaatccaaatctaaaacatttctcatggttttgattgtttattattatatatgaagtggatatcagatttggagcaatctaagcttc 51421205  T
Q  568 cctgccattattagaccacaaatctaacctctgcatttgtatt--tgctgagtgctgaggcagctaacttaacct 640  Q
    ||| |||||||||||||||||||||||||||||||||||||||  || |||||||||||||| ||||| ||||||    
T  51421206 ccttccattattagaccacaaatctaacctctgcatttgtatttgtgttgagtgctgaggcaactaacctaacct 51421280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 268 - 385
Target Start/End: Complemental strand, 51421678 - 51421562
Alignment:
Q  268 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 367  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  51421678 aagtcaatttgaaccattaaatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctctccttcatcc-ccac 51421580  T
Q  368 aaacccataaccagcaac 385  Q
     ||||||  |||||||||    
T  51421579 caacccaccaccagcaac 51421562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 49287770 - 49287838
Alignment:
Q  296 tcttatcatacactctcaacactatatttt--tgtcactatcttccactaccatctctttcattcatcc 362  Q
    |||||||||||||||||||||| | |||||  |||||||||||||||| |||||| || || |||||||    
T  49287770 tcttatcatacactctcaacaccaaatttttttgtcactatcttccacaaccatcactctccttcatcc 49287838  T

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Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 268 - 640
Target Start/End: Complemental strand, 38932131 - 38931757
Alignment:
Q  268 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 367  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38932131 aagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 38932032  T
Q  368 aaacccataaccagcaactaatcaaaaccaccgtcccaactctttattgttaatttatttaatttcccttgtctctccttcatccttattttattttctt 467  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38932031 aaacccataaccagcaactcatcaaaaccaccgtcccaactctttattgttaatttatttaatttcccttgtctctccttcatccttattttattttctt 38931932  T
Q  468 tgctacaatgtattaatcccaatccaaaacattgatcatggttttgattgttcattattatatatgaagtgaatatcagatttggagcaatctaagcttc 567  Q
    || | |||||||||||||| |||| ||||||||  ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  38931931 tgatgcaatgtattaatccaaatctaaaacatttctcatggttttgattgtttattattatatatgaagtggatatcagatttggagcaatctaagcttc 38931832  T
Q  568 cctgccattattagaccacaaatctaacctctgcatttgtatt--tgctgagtgctgaggcagctaacttaacct 640  Q
    ||| |||||||||||||||||||||||||||||||||||||||  || |||||||||||||| ||||| ||||||    
T  38931831 ccttccattattagaccacaaatctaacctctgcatttgtatttgtgttgagtgctgaggcaactaacctaacct 38931757  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 268 - 385
Target Start/End: Original strand, 38931359 - 38931475
Alignment:
Q  268 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 367  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  38931359 aagtcaatttgaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctctccttcatcc-ccac 38931457  T
Q  368 aaacccataaccagcaac 385  Q
     ||||||  |||||||||    
T  38931458 caacccaccaccagcaac 38931475  T

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Target: chr8 (Bit Score: 158; Significance: 1e-83; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 451 - 640
Target Start/End: Complemental strand, 37562937 - 37562748
Alignment:
Q  451 ccttattttattttctttgctacaatgtattaatcccaatccaaaacattgatcatggttttgattgttcattattatatatgaagtgaatatcagattt 550  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  37562937 ccttattttattttctttgctgcaatgtattaatcccaatccaaaatattgctcatgattttgattgttcattattatatatgaagtggatatcagattt 37562838  T
Q  551 ggagcaatctaagcttccctgccattattagaccacaaatctaacctctgcatttgtatttgctgagtgctgaggcagctaacttaacct 640  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  37562837 ggagcaatctaagcttcccttccattattagaccacaaatctaacctctccatttgtatttgttgagtgctgaggcagctaacttaacct 37562748  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 268 - 369
Target Start/End: Complemental strand, 13935056 - 13934955
Alignment:
Q  268 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 367  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13935056 aagtcacttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 13934957  T
Q  368 aa 369  Q
    ||    
T  13934956 aa 13934955  T

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Target: chr8; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 268 - 385
Target Start/End: Original strand, 37562340 - 37562456
Alignment:
Q  268 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  37562340 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctctccttcatcc-ccac 37562438  T
Q  368 aaacccataaccagcaac 385  Q
     ||||||  |||||||||    
T  37562439 caacccaccaccagcaac 37562456  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 314 - 393
Target Start/End: Complemental strand, 37563017 - 37562938
Alignment:
Q  314 acactatatttttgtcactatcttccactaccatctctttcattcatcctccacaaacccataaccagcaactaatcaaa 393  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  37563017 acactatatttttgtcactatcttccgataccatctctttcattcatcctccacaaacccctaaccagcgactcatcaaa 37562938  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 1487662 - 1487690
Alignment:
Q  298 ttatcatacactctcaacactatattttt 326  Q
    |||||||||||||||||||||||||||||    
T  1487662 ttatcatacactctcaacactatattttt 1487690  T

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Target: chr5 (Bit Score: 115; Significance: 4e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 134 - 264
Target Start/End: Complemental strand, 38690685 - 38690555
Alignment:
Q  134 attagacgggattggataagaagaaaataatggtggtgtttggggtattttctcttgttcctctcaagttttttcttatgattttttcgtgcaacttacc 233  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38690685 attaaacgggattggataagaagaaaataatggtggtgtttggggtattttctcttgttcctctcaagttttttcttatgattttttcgtgtaacttacc 38690586  T
Q  234 tgacctggtcttcgattttatagtcccaatc 264  Q
    |||| | ||||||||||||||||||||||||    
T  38690585 tgacatcgtcttcgattttatagtcccaatc 38690555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 38703507 - 38703425
Alignment:
Q  151 aagaagaaaataatggtggtgttt-ggggtattt-tctcttgttcctctcaagttttttcttatgattttttcgtgcaactta 231  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  38703507 aagaagaaaataatggtggtgttttggggtgtttctctcttgttcctctcaagttttttcctatgattttttcgtgtaactta 38703425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 32944452 - 32944404
Alignment:
Q  303 atacactctcaacactatatttttgtcactatcttccactaccatctct 351  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  32944452 atacaccctcaacactagattattgtcactatcttccactaccatctct 32944404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 38064871 - 38064839
Alignment:
Q  291 tacaatcttatcatacactctcaacactatatt 323  Q
    |||||||||||||||||||| ||||||||||||    
T  38064871 tacaatcttatcatacactcccaacactatatt 38064839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 296 - 380
Target Start/End: Complemental strand, 4386173 - 4386088
Alignment:
Q  296 tcttatcatacactctcaacactata--tttttgtcactatcttccactaccatctctttcattcatcctccacaaacccataacca 380  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||| |||||| || || ||||||| |||| ||||||| ||||    
T  4386173 tcttatcatacactctcaacactagaattttttgtcactatcttccacaaccatcactctccttcatcc-ccaccaacccatcacca 4386088  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 33370843 - 33370795
Alignment:
Q  303 atacactctcaacactatatttttgtcactatcttccactaccatctct 351  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  33370843 atacaccctcaacactagattattgtcactatcttccactaccatctct 33370795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 32548641 - 32548591
Alignment:
Q  303 atacactctcaacactatatt--tttgtcactatcttccactaccatctct 351  Q
    |||||| ||||||| ||||||  ||||||||||||||||||||||||||||    
T  32548641 atacaccctcaacattatattattttgtcactatcttccactaccatctct 32548591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 35770357 - 35770411
Alignment:
Q  296 tcttatcatacactctcaacactata--tttttgtcactatcttccactaccatc 348  Q
    |||||||||||||||||||||| | |  |||||||||||||||||||| ||||||    
T  35770357 tcttatcatacactctcaacaccagaattttttgtcactatcttccacaaccatc 35770411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 8464465 - 8464497
Alignment:
Q  291 tacaatcttatcatacactctcaacactatatt 323  Q
    |||||||||||||||||||| ||||||||||||    
T  8464465 tacaatcttatcatacactcccaacactatatt 8464497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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