View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_low_71 (Length: 245)
Name: NF8893_low_71
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 40785166 - 40785386
Alignment:
| Q |
1 |
aattccacctgaatacaatctcttttaacaatgatttgtttgttgattgccactttcctttatactggatatataagctttgatcatgatataattagtt |
100 |
Q |
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| T |
40785166 |
aattccacctgaatacaatctcttttaacaatgatttgtttgttgattgccacttacctttatactggatatataagctttgatcatgatataattaatt |
40785265 |
T |
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| Q |
101 |
caattgattcaaccataattatactaacact--cccaataagtaaaacaactcttattctcaaacaacaatgatgtaaccaacaatttccactatatgtc |
198 |
Q |
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| T |
40785266 |
caattgattcaaccataattatactaacactagcaaaataagtaaaacaactcttattctcaaacaacaatgatgtaaccaacaatttccactatctgtc |
40785365 |
T |
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| Q |
199 |
tctctaactctctcacttcca |
219 |
Q |
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||||||||||||||||||||| |
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| T |
40785366 |
tctctaactctctcacttcca |
40785386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 40793026 - 40793090
Alignment:
| Q |
139 |
agtaaaacaactcttattctcaaacaacaatgatgtaaccaacaatttccactatatgtctctcta |
204 |
Q |
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| T |
40793026 |
agtaaaatatctattattctcaaa-aacaatgatgtaaccaacaaattccactatttgtctctcta |
40793090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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