View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8893_low_72 (Length: 244)
Name: NF8893_low_72
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_72 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 54 - 225
Target Start/End: Original strand, 34971546 - 34971717
Alignment:
| Q |
54 |
ccttagggctattgataggagaacttgcagtatcttccaaatcatgatcaaccaaactagttatgattttcttcctcttcttgaaactcaatttcttaat |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34971546 |
ccttagggctattgataggagaacttgcagtatcttccaaatcatgatcaaccaaactagttatgattttcttcctcttcttgaaactcaatttcttaat |
34971645 |
T |
|
| Q |
154 |
atattccataccaccttgtgcactttgatcagctaannnnnnnncaccaaccaaggaattagcagcatcaga |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34971646 |
atattccataccaccttgtgcactttgatcagctaattttttttcaccaaccaaggaattagcagcatcaga |
34971717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University