View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_low_74 (Length: 240)
Name: NF8893_low_74
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4089231 - 4089453
Alignment:
| Q |
1 |
tacataaacaatactgttatgtacttatgttctttttattactctaagcttgataccatgcttgaagttaagaactaaaccatattcaagttctacaggt |
100 |
Q |
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| T |
4089231 |
tacataaacaatactgttatgtacttatgttctttttattactctaagcttgataccatgcttgaagttaagaactaaaccatattcaagttctacaggt |
4089330 |
T |
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| Q |
101 |
ttttccatgttaagtgaatgacgaaatatatattttctatacaaatgaatcaaagtaagcttgatctcttgcaaagaaaatttctgtccaatacatgccc |
200 |
Q |
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| T |
4089331 |
ttttccatgttaagtgaatgacgaaatatatattttctatacaaatgaatcaaagtaagcttgatctcttgcaaagaaaatttctgtccaatacatgccc |
4089430 |
T |
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| Q |
201 |
ttggacctattccaaatggtatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4089431 |
ttggacctattccaaatggtatg |
4089453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 4084091 - 4084285
Alignment:
| Q |
30 |
ttctttttattactctaagcttgataccatgcttgaagttaagaactaaaccatattcaagttctacaggtttttccatgttaagtgaat-gacgaaata |
128 |
Q |
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||||||||||||||| ||| |||| ||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |||||||| | ||||| |
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| T |
4084091 |
ttctttttattactcaaagattgacaccatgcttgaagttgaaaactaaaccatattcaagttctacatgtttttccatgtcaagtgaataaaaaaaata |
4084190 |
T |
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| Q |
129 |
tatattttctatacaaatgaatcaaagtaagcttgatctcttgcaaagaaaatttctgtccaatacatgcccttggacctattccaaatggtatg |
223 |
Q |
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| T |
4084191 |
catattttctatataaatgaatcaaagttaggttgatctattggaagaaaaatttatatccaatacatacccttggaccaattccaaatggtatg |
4084285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 48184394 - 48184199
Alignment:
| Q |
28 |
tgttctttttattactctaagcttgataccatgcttgaagttaagaactaaaccatattcaagttctacaggtttttccatgttaagtgaatgacgaaat |
127 |
Q |
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|||||||||||| || || | ||||| ||||||||||||||| || |||| ||||| || ||||||| ||| ||||||| | | |||||| ||||| |
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| T |
48184394 |
tgttctttttatgacactgaacttgacaccatgcttgaagttgaggactattccatactcgagttctaaagggctttccatatcagctgaatgccgaaac |
48184295 |
T |
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| Q |
128 |
atatattttctatacaaatgaatcaaagtaagcttgatctcttgcaaagaaaatttctgtccaatacatgcccttggacctattccaaatggtatg |
223 |
Q |
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| T |
48184294 |
aagtattttttgtataaatgaataagtgaaagcttgatctcttgcatggaaaatttctgaccaatgcaagctctaggaccaattccaaatggtatg |
48184199 |
T |
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