View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_low_8 (Length: 585)
Name: NF8893_low_8
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 22 - 568
Target Start/End: Complemental strand, 37629875 - 37629324
Alignment:
| Q |
22 |
acagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgctaccacacggtgttccacacttttgtacttaccatttg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37629875 |
acagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgctaccacacggtgttccacacttttgtacttgccatttg |
37629776 |
T |
|
| Q |
122 |
ttattacctgtcacattnnnnnnnnnnnnnn-----ttaatgcttgatatgaatcatttgttgttgattttatatgtttgtaaaaatgttaatataaatt |
216 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
37629775 |
ttattacctgtcacattaaaaataaaaaataaaaaattaatgcttgatatgaatcatttgttgttgattttat--gtttgtaaaaatgtcaatataaatt |
37629678 |
T |
|
| Q |
217 |
tagaagaatgnnnnnnnnn--acctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatctacccagttaccatctttgagaa |
314 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37629677 |
tagaagaatgtttttttttttacctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatctacccagttaccatctttgagaa |
37629578 |
T |
|
| Q |
315 |
gctgaaggccactgaccatgtcatcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagaccctttacaaggtctggttttgggcatgg |
414 |
Q |
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| T |
37629577 |
gctgaaggccactgaccttgtcatcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagaccctttacaaggtctggttttgggcatgg |
37629478 |
T |
|
| Q |
415 |
agggtagtttgcaaccttggttccaaaagttggtccctttgatccatacaaagccttttttaggtaccccttttctagtccaagattttcacataataag |
514 |
Q |
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| T |
37629477 |
agggtagtttgcaaccttggttccaaaagttggtccctttgatccatacaaagccttttttaggtaccccttttctagtccaagattttcacataataag |
37629378 |
T |
|
| Q |
515 |
tctagtagctcctctgcaagtgtctctagcttcaaagcaaattccttcattgat |
568 |
Q |
| |
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| T |
37629377 |
tctagtagctcctctgcaagtgtctctagcttcaaagcaaattccttcattgat |
37629324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 236 - 565
Target Start/End: Original strand, 36871891 - 36872220
Alignment:
| Q |
236 |
acctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatctacccagttaccatctttgagaagctgaaggccactgaccatgt |
335 |
Q |
| |
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||||||||||||||||||||||||| || ||||| || |||| || || ||||| ||||| | ||||||||||| | || |||||||||||| | | |
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| T |
36871891 |
acctcaagttggtcaccaaggttgacaacgatggagtggcgcattgggggaacatcaacccactggccatctttgagcaattgtaggccactgaccttat |
36871990 |
T |
|
| Q |
336 |
catcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagaccctttacaaggtctggttttgggcatggagggtagtttgcaaccttggt |
435 |
Q |
| |
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|||| ||||| |||||||||||||| |||||||||||||| ||||| |||||||| || || ||||| ||||||||| |||||||||| || || ||||| |
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| T |
36871991 |
catcctggaagagaaggatgattcctccggcatcggtgtgagcacgaagacccttcaccagctctggatttgggcattgagggtagttggctactttggt |
36872090 |
T |
|
| Q |
436 |
tccaaaagttggtccctttgatccatacaaagccttttttaggtaccccttttctagtccaagattttcacataataagtctagtagctcctctgcaagt |
535 |
Q |
| |
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|||||||||||||| |||||||||| || |||||||| ||||| || || |||||||||||||| |||||||| || || | ||||| ||||| ||| |
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| T |
36872091 |
gccaaaagttggtcctcttgatccataaaatgcctttttaaggtaacctttctctagtccaagattctcacataacaaatccaaaagctcttctgctagt |
36872190 |
T |
|
| Q |
536 |
gtctctagcttcaaagcaaattccttcatt |
565 |
Q |
| |
|
|||||| | ||| || ||||||||||||| |
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| T |
36872191 |
ttctctaacctcagagaaaattccttcatt |
36872220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 36871189 - 36871303
Alignment:
| Q |
18 |
aatgacagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgctaccacacggtgttccacacttttgtacttacca |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||| |
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| T |
36871189 |
aatgacagcatcactcccagggttgtagaatgatgctatggacattcttgttccatttgtttgtgctatcacacggtgttccacactcttgtacttgcca |
36871288 |
T |
|
| Q |
118 |
tttgttattacctgt |
132 |
Q |
| |
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||||||||||||||| |
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| T |
36871289 |
tttgttattacctgt |
36871303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 236 - 566
Target Start/End: Complemental strand, 8927112 - 8926782
Alignment:
| Q |
236 |
acctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatctacccagttaccatctttgagaagctgaaggccactgaccatgt |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||| |||| ||||||||||| | ||| | ||||||||||||||||||| |||||||| ||| |
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| T |
8927112 |
acctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgactttgt |
8927013 |
T |
|
| Q |
336 |
catcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagaccctttacaaggtctggttttgggcatggagggtagtttgcaaccttggt |
435 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||| |||||||| | || ||||| | || || || || || || ||||||||||| ||| || || |
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| T |
8927012 |
catcttggaagagaaggatgatgccaccagcatctgtgtgtgctctaagtcccttgatgagatcaggcttaggacaaggagggtagttactaacttttgt |
8926913 |
T |
|
| Q |
436 |
tccaaaagttggtccctttgatccatacaaagccttttttaggtaccccttttctagtccaagattttcacataataagtctagtagctcctctgcaagt |
535 |
Q |
| |
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|||||| |||| |||||||||||||| || | || || | |||||| || || ||||||||||| ||||| |||||||| || || |||||||| ||| |
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| T |
8926912 |
accaaaatttggaccctttgatccataaaacactttcttcaagtaccctttctcaagtccaagattctcacacaataagtcaagaagttcctctgccagt |
8926813 |
T |
|
| Q |
536 |
gtctctagcttcaaagcaaattccttcattg |
566 |
Q |
| |
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|||| | ||| |||||||||||||||| |
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| T |
8926812 |
ttctccaatttctctgcaaattccttcattg |
8926782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 345
Target Start/End: Complemental strand, 55528201 - 55528092
Alignment:
| Q |
236 |
acctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatctacccagttaccatctttgagaagctgaaggccactgaccatgt |
335 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| |||| || |||||||| | ||| | |||||||| || |||||||| || | ||| ||| |
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| T |
55528201 |
acctcaatttggtcaccaaggttgataacaatggaatggcgcattggtgggacatcaatccattggccatctttaaggagctgaagtccgccaaccttgt |
55528102 |
T |
|
| Q |
336 |
catcttggaa |
345 |
Q |
| |
|
|||||||||| |
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|
| T |
55528101 |
catcttggaa |
55528092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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