View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8893_low_81 (Length: 224)
Name: NF8893_low_81
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_81 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15804302 - 15804100
Alignment:
| Q |
1 |
ttgattattgtaaaaaatggcatcctgaacctgaagctagacaagacacagttgttttggcacaaaaacatgttgagaaaccgcccaagaaagtttatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15804302 |
ttgattattgtaaaaaatggcatcctgaacctgaagctagacaagacacagtt---------------------gagaaaccgcccaagaaagtttatgc |
15804224 |
T |
|
| Q |
101 |
gcaaaagagagatggcagacaagaccaggtcaaaacaaatgaagctattgatctggagaaagaagtggttaatctagatgaacaacagatagcaggtcag |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15804223 |
gcaaaagagagatggcagacaggaccaggtcaaaacaaatgaagctattgatgtggagaaagaagtggttaatctagatgaacaacagatagcaggtcag |
15804124 |
T |
|
| Q |
201 |
gagattaatgaggatgaattggcc |
224 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
15804123 |
aagattaatgaggatgaattggcc |
15804100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University