View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8893_low_9 (Length: 560)
Name: NF8893_low_9
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 120 - 393
Target Start/End: Complemental strand, 52594606 - 52594334
Alignment:
| Q |
120 |
ttccttgaatttgcatgttagttacaatggaaacttgcggcatatgcatgttgtttggtaacaaatatttgaccttgaattaacactattttaacgtctc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52594606 |
ttccttgaatttgcatgttagttacaatggaaacttgcggcatatgcatgt-gtttggtaacaaatatttgaccttgaattaacactattttaacgtctc |
52594508 |
T |
|
| Q |
220 |
aaccaatatacccaacaaaagctaaatttgaggagtttataagtannnnnnnnnnnngatagggagcctttttgatacctcttatcattttcaaggacga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52594507 |
aaccaatatacccaacaaaagctaaatttgaggagcttataagtattttttatttttgatagggagcctttttgatacctcttatcattttcaaggacga |
52594408 |
T |
|
| Q |
320 |
aagtggctgtttagtgtttacttgaggtttaagttaagtttgaaagtaacaatacaagcgtcggttttgtttag |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52594407 |
aagtggctgtttagtgtttacttgaggtttaagttaagtttcaaagtaacaatacaagcgtcggttttgtttag |
52594334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 452 - 545
Target Start/End: Complemental strand, 52594283 - 52594190
Alignment:
| Q |
452 |
gagaggtcccacccaccattggaatgaatagaaaatgtcatgaagagtagattgtgtatggatgagcacataacctgctgctggtagtataagg |
545 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52594283 |
gagaggtcccacccaccattggaatggatagaaaatgtcatgaagagtagattgtgtatggatgagcacataacctgctgctggtagtataagg |
52594190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University