View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8894_low_1 (Length: 813)

Name: NF8894_low_1
Description: NF8894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8894_low_1
NF8894_low_1
[»] chr3 (9 HSPs)
chr3 (12-797)||(2821096-2821880)
chr3 (359-569)||(2834828-2835031)
chr3 (591-684)||(2809970-2810063)
chr3 (72-157)||(48196786-48196871)
chr3 (396-535)||(2771858-2771991)
chr3 (583-682)||(2800402-2800501)
chr3 (583-617)||(2771782-2771816)
chr3 (40-130)||(46574483-46574573)
chr3 (600-677)||(2835080-2835157)
[»] chr1 (4 HSPs)
chr1 (72-157)||(23539739-23539823)
chr1 (583-685)||(11114761-11114863)
chr1 (73-202)||(40569674-40569804)
chr1 (398-449)||(11114579-11114630)
[»] chr5 (1 HSPs)
chr5 (72-157)||(16397967-16398052)
[»] chr8 (1 HSPs)
chr8 (39-117)||(10723775-10723853)
[»] chr2 (1 HSPs)
chr2 (197-301)||(15999232-15999333)
[»] scaffold0018 (1 HSPs)
scaffold0018 (102-199)||(32103-32200)
[»] chr4 (1 HSPs)
chr4 (161-238)||(42286518-42286593)


Alignment Details
Target: chr3 (Bit Score: 698; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 12 - 797
Target Start/End: Complemental strand, 2821880 - 2821096
Alignment:
Q  12 gcagagagatgaaactatacaagacctttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactga 111  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  2821880 gcagagagatgaaactatacaagacctttgttgaagttgtgggattttaaagataagaatgagagaaaataataagaaccttgaatgttattgatactga 2821781  T
Q  112 cttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821780 cttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatat 2821681  T
Q  212 ataaactctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaagatatcataagatat 311  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2821680 ataaactctaatcctaagagatgctcttataaggttataaactaattgcaggaaataacttccgatactctaatacaatattaaagatattataagatat 2821581  T
Q  312 attctatgattcttacacttcctttttcagctttcaaaaataatcaagaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821580 attctatgattcttacacttcctttttcagctttcaaaaataatcaagaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctc 2821481  T
Q  412 ctgattaacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcatttgcatcaatcttgattagccgaataaacaaattcattcaa 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2821480 ctgattaacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcattagcatcaatcttgattagccgaataaacaaattcattcaa 2821381  T
Q  512 atgaaatggttttgattattattacaagagatgaagtaaagttctcaccaatcttaaaaacagtaaagaacagaaatatcaaaaagacgtctgaatggag 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821380 atgaaatggttttgattattattacaagagatgaagtaaagttctcaccaatcttaaaaacagtaaagaacagaaatatcaaaaagacgtctgaatggag 2821281  T
Q  612 tccagaaataccccctgattacaagattttgagtcaaagcttctccaaccaaattatacaacaccacaaatgacnnnnnnnnnnnngaagccagagtcgc 711  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||| ||||||    
T  2821280 tccagaaataccccc-gattacaagattttgagtcaaagcttctccaaccaaattatacaacaccacaaatgacaaaaagaaaaaagaagccacagtcgc 2821182  T
Q  712 tcagtgaacgggatccactttttgctgattattgcaggatgagtggaaatattttactttgagctgtatcgtggagaaccaaattg 797  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2821181 tcagtgaatgggatccactttttgctgattattgcaggatgagaggaaatattttactttgagctgtatcgtggagaaccaaattg 2821096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 359 - 569
Target Start/End: Original strand, 2834828 - 2835031
Alignment:
Q  359 gaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaa 458  Q
    |||||||||| |||||||||||||||||||||||| ||||||||    || ||| |||| |||| ||||||||||||| | |||||||||||||   |||    
T  2834828 gaaatgatggatggatgaaaccggttggctgagacgcatacata----tcgtccagatttactttaaatcaactaggcgtttaaatttacagctacataa 2834923  T
Q  459 tgatagcagcatttgcatcaatcttgattagccgaataaacaaattcattcaaatgaaatggttttg---attattattacaagagatgaagtaaagttc 555  Q
     |||||      | ||||| ||| || |||||  |||||| | ||||||||| ||||| ||||||||   |||||||||||||| | ||||| |||| ||    
T  2834924 cgatag------tagcatcgatcgtggttagcaaaataaaaatattcattcatatgaagtggttttgattattattattacaagggttgaaggaaagctc 2835017  T
Q  556 tcaccaatcttaaa 569  Q
     |||||||||||||    
T  2835018 ccaccaatcttaaa 2835031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 591 - 684
Target Start/End: Complemental strand, 2810063 - 2809970
Alignment:
Q  591 caaaaagacgtctgaatggagtccagaaataccccctgattacaagattttgagtcaaagcttctccaaccaaattatacaacaccacaaatga 684  Q
    ||||| |||||| |||||||||| ||| ||||  | ||||||||||||||||| ||||| ||||  ||| ||||||||| |||||| |||||||    
T  2810063 caaaatgacgtccgaatggagtctagatatacgtcttgattacaagattttgaatcaaaacttccacaatcaaattataaaacacctcaaatga 2809970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 48196871 - 48196786
Alignment:
Q  72 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 157  Q
    ||||||||||||||||||||| |||| ||||| ||| ||||| ||| |||| ||||||| |||| |||||| | ||||||| ||||    
T  48196871 gagagaaaataataagaacctggaatattatttatattgactcgatagtaggttgatacaaaagactaaaccctaatccctgttta 48196786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 396 - 535
Target Start/End: Complemental strand, 2771991 - 2771858
Alignment:
Q  396 atacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcatttgcatcaatcttgattagccgaat 495  Q
    |||||||||| |||||  ||||||||||||||||||||||| | || | |||||||| | | |||||||      | ||||||| |||| |||||  |||    
T  2771991 atacatacatatcctctcgattaacttcaaatcaactaggcctttatagttacagctagattatgatag------tagcatcaagcttggttagcaaaat 2771898  T
Q  496 aaacaaattcattcaaatgaaatggttttgattattatta 535  Q
    ||||| |||||||  |||||| | ||||||||||||||||    
T  2771897 aaacatattcatttgaatgaagtagttttgattattatta 2771858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 682
Target Start/End: Complemental strand, 2800501 - 2800402
Alignment:
Q  583 agaaatatcaaaaagacgtctgaatggagtccagaaataccccctgattacaagattttgagtcaaagcttctccaaccaaattatacaacaccacaaat 682  Q
    |||||| || ||| || |||||||||||||||| | |||   | |||||||||| |||||| ||||||||||   ||| |||||||| ||||||||||||    
T  2800501 agaaatgtccaaatgatgtctgaatggagtccaaatataggtcttgattacaaggttttgaatcaaagcttccaaaactaaattataaaacaccacaaat 2800402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 583 - 617
Target Start/End: Complemental strand, 2771816 - 2771782
Alignment:
Q  583 agaaatatcaaaaagacgtctgaatggagtccaga 617  Q
    ||||||||||||| |||||||||||||||||||||    
T  2771816 agaaatatcaaaacgacgtctgaatggagtccaga 2771782  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 46574573 - 46574483
Alignment:
Q  40 tgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgatac 130  Q
    |||||||||||||  | |||| | |||| ||| |||||  ||||||||||||||||||  ||||||||||||||  || ||| ||||||||    
T  46574573 tgttgaagttgtgagaatttagataaaagaataagagatgataataagaaccttgaatagtattgatactgactgaatagtactttgatac 46574483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 677
Target Start/End: Original strand, 2835080 - 2835157
Alignment:
Q  600 gtctgaatggagtccagaaataccccctgattacaagattttgagtcaaagcttctccaaccaaattatacaacacca 677  Q
    |||||||||||||||||| |||   | || ||||||| |||||| ||||||||||   |||||||||||| |||||||    
T  2835080 gtctgaatggagtccagatataggtcttggttacaaggttttgaatcaaagcttccagaaccaaattataaaacacca 2835157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 23539823 - 23539739
Alignment:
Q  72 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 157  Q
    ||||||||||||||||| | |||||| ||||||||| ||||||||| |||| ||||| | ||||||||||| | ||||||||||||    
T  23539823 gagagaaaataataagacctttgaatattattgata-tgacttgatagtagcttgatccaaaaggctaaaccctaatccctattta 23539739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 685
Target Start/End: Original strand, 11114761 - 11114863
Alignment:
Q  583 agaaatatcaaaaagacgtctgaatggagtccagaaataccccctgattacaagattttgagtcaaagcttctccaaccaaattatacaacaccacaaat 682  Q
    |||||| |||||| ||| | |||||||| ||||||||||   | |||||||||| |||||| || ||| |||  ||||||||||||| ||||||||||||    
T  11114761 agaaatgtcaaaatgacatgtgaatggaatccagaaataggtcttgattacaaggttttgaatcgaagtttccacaaccaaattataaaacaccacaaat 11114860  T
Q  683 gac 685  Q
    |||    
T  11114861 gac 11114863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 202
Target Start/End: Complemental strand, 40569804 - 40569674
Alignment:
Q  73 agagaaaataataagaaccttg-aatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaa 171  Q
    |||||||||||||||||||| | |||||||||||||||| ||  || |||| ||||||| |||  || ||  | |||||||||||| || |||| ||  |    
T  40569804 agagaaaataataagaacctcggaatgttattgatactggctgaatagtagcttgatacaaaaaactcaattctaatccctatttatagcgatacacgga 40569705  T
Q  172 ttcaaccttaaatcaagaacaaatcataata 202  Q
     |||| | |||||||||||||||||| ||||    
T  40569704 ctcaatcctaaatcaagaacaaatcaaaata 40569674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 449
Target Start/End: Original strand, 11114579 - 11114630
Alignment:
Q  398 acatacatgtcctcctgattaacttcaaatcaactaggcatataaatttaca 449  Q
    ||||||||||||| |||||||||||||||||||| |  ||| ||||||||||    
T  11114579 acatacatgtccttctgattaacttcaaatcaaccacacatctaaatttaca 11114630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 16397967 - 16398052
Alignment:
Q  72 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 157  Q
    ||||||||||||||| |||||||||| || |||||||| | |  || |||| ||||| |||||| ||||| || ||||||||||||    
T  16397967 gagagaaaataataaaaaccttgaatattgttgatactaattgaatagtagcttgatcccaaagactaaatactaatccctattta 16398052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 10723775 - 10723853
Alignment:
Q  39 ttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgat 117  Q
    |||||||| ||||| ||||||| | |||   | ||||||||||||||||||| |||||| ||||||||| | |||||||    
T  10723775 ttgttgaaattgtgcaattttagataaatggacgagagaaaataataagaactttgaatattattgataataacttgat 10723853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 197 - 301
Target Start/End: Original strand, 15999232 - 15999333
Alignment:
Q  197 ataatattaagatatataaactctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaa 296  Q
    |||||| ||||  ||||||| || |||||||||||||||||   |||| |||||||||||||| | || |||||||  |||||| ||||| |||||  ||    
T  15999232 ataataataagtaatataaaatcaaatcctaagagatactc---taagattataaactaatcatatgacataacttaagatactttaatataatatcgaa 15999328  T
Q  297 gatat 301  Q
    |||||    
T  15999329 gatat 15999333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 32200 - 32103
Alignment:
Q  102 ttgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcata 199  Q
    |||||| ||||||||| |||| ||||||| |||  || || || |||||||||||| ||||||| | | | |||| | | ||||||||||||||||||    
T  32200 ttgataatgacttgatagtaggttgatacaaaaaactgaatactaatccctatttatagggatacatagactcaatcatgaatcaagaacaaatcata 32103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 42286518 - 42286593
Alignment:
Q  161 ggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcctaagagatactct 238  Q
    ||||| ||||| |||| |||||||||||| ||||||| |||| ||| | || |||||||| |||||||||||||||||    
T  42286518 ggatacacaaactcaatcttaaatcaagaccaaatcaaaataataaca-at-taaactctgatcctaagagatactct 42286593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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