View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8894_low_2 (Length: 477)
Name: NF8894_low_2
Description: NF8894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8894_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 258 - 460
Target Start/End: Original strand, 16201422 - 16201624
Alignment:
| Q |
258 |
atgaatcataaataaagaaatgaagtcacaaagtactaaccttgagttgattcattttcccctggtttcccaaaccaagatccaacagtttctttaacca |
357 |
Q |
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| T |
16201422 |
atgaatcataaataaagaaatgaagtcacaaagtactaaccttgagttgattcattttcccctggtttcccaaaccaagatccaacagtttccttaacca |
16201521 |
T |
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| Q |
358 |
tatcaaccatacctttaccaaactccccatctttaatctcatcatcccaacctcctaacctcctcttcacttcttcactctcagtcaccttccctcttgg |
457 |
Q |
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| T |
16201522 |
tatcaaccatacctttaccaaactccccatctttaatctcatcatcccaacctcctaacctcctcttcacttcttcactctcagtcaccttccctcttgg |
16201621 |
T |
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| Q |
458 |
cct |
460 |
Q |
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| T |
16201622 |
cct |
16201624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 3 - 252
Target Start/End: Original strand, 16201079 - 16201310
Alignment:
| Q |
3 |
catataattatgataattcacagaagaaaccaattcttcaatgagctgaatcctgaagtcttctttcacctgcagcttgatgaacctgtccaacttcagc |
102 |
Q |
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| T |
16201079 |
catataattatgataattcacagaagaaaccaattcttcaatgagctgaatcctgaagtcttctttcacctgcagtttgatgaacctgtccaacctcagc |
16201178 |
T |
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| Q |
103 |
accagtattcctaggcattccttcacttcctacaa----acaaattaaaaatcaaaggtcacactttttaccagattgtgtaaactgtaatctatgaatg |
198 |
Q |
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| T |
16201179 |
accagtattcctaggcattccttcacttcctacaataacacaaattaaaaatcaaaggtcacactttttac----------------------atgaatg |
16201256 |
T |
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| Q |
199 |
tctcaaaatcacagcaaaacacttgtacaaactcttcctagtctattagtttta |
252 |
Q |
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| T |
16201257 |
tatcaaaattacagcaaaacacttgtacaaactcttcttagtctattagtttta |
16201310 |
T |
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