View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8894_low_3 (Length: 476)
Name: NF8894_low_3
Description: NF8894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8894_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 31 - 467
Target Start/End: Complemental strand, 41514188 - 41513752
Alignment:
| Q |
31 |
tctaaaaagttgtactttttaaacagtcaaggggctaaaattaaatacaatattaacttgccatacctttgtgaggaaggatttgaactttgcgaatatc |
130 |
Q |
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| T |
41514188 |
tctaaaaagttgtactttttaaacagtcaaggggctaaaattaaatacaatattaacttgccatacctttgtgaggaatgatttgaacttcgcgaatatc |
41514089 |
T |
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| Q |
131 |
aaaggatccatgagttctcccattaccttttttgccattatgaaacccatgcatctttgtaacacagataatcagttaacaaaaagattatatagtagat |
230 |
Q |
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| T |
41514088 |
aaaggatccataagttctcccattaccatttttgccattatgaaacccatgcatctttgtaacacagatagtcagttaacaaaaagattatatagtagat |
41513989 |
T |
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| Q |
231 |
tatatagttgcacacaaacttcactaacgatgtcctagaccatacctcatgtcaaatgcaatcatcatctttcgcctgtccatgttttccgtagagccgc |
330 |
Q |
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| T |
41513988 |
tatatagttgcacacaaacttcactaacgatgtcctagaccatacctcatgtcaaatgcaatcatcatctgtcgcctgtccatgttttccatagagccgc |
41513889 |
T |
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| Q |
331 |
tatttgaaccatcctcgcaaaagtcagcggcatttcccagtgtgcctacctgttaagtaaacccttcaggtcaaaacaagcatgagaagtaaggctgacc |
430 |
Q |
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| T |
41513888 |
tatttgaaccatcctcgcaaaagtcagcggcatttcccagtgtgcctacctgttaagtaaacccttcaggtcaaaccaagcatgagaagtaaggctgacc |
41513789 |
T |
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| Q |
431 |
aggctatacatgaggaaacaccaactattgatgtcca |
467 |
Q |
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| T |
41513788 |
aggctatacatgaggaaacaccaactattgatgtcca |
41513752 |
T |
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