View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8894_low_4 (Length: 395)
Name: NF8894_low_4
Description: NF8894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8894_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 17)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 4652211 - 4652572
Alignment:
| Q |
18 |
acttgactcattgatggacgttgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaacccctta |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4652211 |
acttgactcattgatggacgttgagtcccatcatcatgcacacaactcaacgccagcttgcaataatatttcaagcactcctctgtgatagaacccctta |
4652310 |
T |
|
| Q |
118 |
ggaatggatccactatttgttcaattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaaccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4652311 |
ggaatggatccactatttgttcaattgccacaccttcatcgtagcattttttaaaccaacaaactagacttgctgtattcttatccaaatcacgaaccaa |
4652410 |
T |
|
| Q |
218 |
aggtggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4652411 |
aggtggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaaa |
4652510 |
T |
|
| Q |
318 |
taccctaggctacccttcaccatcgtgctaacatgggttgtagacatccctgtcggtcccac |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4652511 |
taccctaggctacccttcaccatcgtgctaacatgggttgtagacatccttgtcggtcccac |
4652572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 4665625 - 4665989
Alignment:
| Q |
17 |
cacttgactcattgatggacgttgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaacccctt |
116 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
4665625 |
cacttgactcattgagggtcgttgagtcccatcatcatgcaagcaacttaacgccaacttgcaataatatttcaagtactcatctgtgatagaatccctt |
4665724 |
T |
|
| Q |
117 |
aggaatggatccactatttgttcaattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaacca |
216 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
4665725 |
acgaatggatcaactatttgttcaattgccacaccttcatcgtaacattttttaaaccaacaaactagactagcagtattcttatccaaatcacgaacca |
4665824 |
T |
|
| Q |
217 |
aaggtggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4665825 |
aaggtggtctagcacacaacacctcaagaagcaccacaccgaacgagtacacatcagattttagagttagcctttggagcatataatattcgggatccaa |
4665924 |
T |
|
| Q |
317 |
ataccctaggctacccttcaccatcgtgctaacatgggttgtagacatccctgtcggtcccacct |
381 |
Q |
| |
|
||| || ||||| ||||||||||||||||| |||||||| || || ||||||||||||||||||| |
|
|
| T |
4665925 |
atatccgaggctccccttcaccatcgtgctgacatgggtagttgatatccctgtcggtcccacct |
4665989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 4629599 - 4629963
Alignment:
| Q |
17 |
cacttgactcattgatggacgttgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaacccctt |
116 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
4629599 |
cacttgactcattgagggtcgttgagtcccatcatcatgcaagcaacttaacgccaacttgcaataatatttcaagcactcaactgtgatagaatccctt |
4629698 |
T |
|
| Q |
117 |
aggaatggatccactatttgttcaattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaacca |
216 |
Q |
| |
|
| ||||||||| |||||||||||||| ||||||||||||| | |||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4629699 |
aagaatggatcgactatttgttcaatcgccacaccttcattatggcatttttgaaaccaacaaactagactagctgtattcttatccaaatcacgaacca |
4629798 |
T |
|
| Q |
217 |
aaggtggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
4629799 |
aaggtggtctagcacacaacacctcaagaagcaccacaccaaacgagtacacgtcagattttagagttagcctttggagcatatagtattcgggatccaa |
4629898 |
T |
|
| Q |
317 |
ataccctaggctacccttcaccatcgtgctaacatgggttgtagacatccctgtcggtcccacct |
381 |
Q |
| |
|
||| || ||||| ||||||||||||||||| |||||||| || | || ||||| |||||||||| |
|
|
| T |
4629899 |
atatccaaggctccccttcaccatcgtgctgacatgggtagtcgttattcctgtaggtcccacct |
4629963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 4671330 - 4671694
Alignment:
| Q |
17 |
cacttgactcattgatggacgttgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaacccctt |
116 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| | ||||||||| ||||| |
|
|
| T |
4671330 |
cacttgactcattgagggtcgttgagttccatcatcatgcaagcaactcaacgccaacttgcaataatattccaaacactcacccgtgatagaatccctt |
4671429 |
T |
|
| Q |
117 |
aggaatggatccactatttgttcaattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaacca |
216 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
4671430 |
aggaatgaatccagtatttgttcaatcgccacaccttcatcgtagcatcttttaaaccaacaaactagactagctgtattcttatccaaatcgcgaacca |
4671529 |
T |
|
| Q |
217 |
aaggtggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaa |
316 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| || || ||||| || |
|
|
| T |
4671530 |
aaggtggcctagcacacaacacttcaagaagtaccacaccgaatgagtacacatctgattttagagttagcctttggaacatatagtactcaggatctaa |
4671629 |
T |
|
| Q |
317 |
ataccctaggctacccttcaccatcgtgctaacatgggttgtagacatccctgtcggtcccacct |
381 |
Q |
| |
|
|||||| ||||| || |||||||| ||||| || ||||| || | ||||| || |||||||||| |
|
|
| T |
4671630 |
atacccaaggcttcctttcaccattgtgctgacgtgggtagttgttatccccgtgggtcccacct |
4671694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 4660491 - 4660858
Alignment:
| Q |
17 |
cacttgactcattgatggacgttgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaacccctt |
116 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||||| |||||| |||||||||||||||||||||| ||| ||||| || ||||||||| | || |
|
|
| T |
4660491 |
cacttgactcattgaaggtcgttgagtcccatcatcatgcaaacaacttaacgccaacttgcaataatattccaaacactcatccgtgatagaatctttt |
4660590 |
T |
|
| Q |
117 |
aggaatggatccactatttgttcaattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaacca |
216 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||| ||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
4660591 |
agggatggatccactatttgttcaatcgccacaccttcatcatagcatcttttaaaccaacaaactagactagttgtattcttatccaaatcgcgaacca |
4660690 |
T |
|
| Q |
217 |
aaggtggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaa |
316 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
4660691 |
atggtggcctagcacacaacacctcaagaagcaccacaccgaacgagtacacttcagattttagagttaacctttggagcatatagtattggggatccaa |
4660790 |
T |
|
| Q |
317 |
ataccctaggctacccttcaccatcgtgctaac---atgggttgtagacatccctgtcggtcccacct |
381 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| || ||| || || || ||||||||||||||||||| |
|
|
| T |
4660791 |
atacccaaggctccccttcaccattgtgctgacgtgatgagtagtcgatatccctgtcggtcccacct |
4660858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 4642394 - 4642758
Alignment:
| Q |
17 |
cacttgactcattgatggacgttgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaacccctt |
116 |
Q |
| |
|
||||||||||||||| || |||||| ||||||||||||||| |||||| |||||||||||||||||||||| || ||||| | ||||| ||| | ||| |
|
|
| T |
4642394 |
cacttgactcattgagggtcgttgaattccatcatcatgcaaacaacttaacgccaacttgcaataatattctaaacactcgcccgtgatggaatctctt |
4642493 |
T |
|
| Q |
117 |
aggaatggatccactatttgttcaattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaacca |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||| ||||||||||||| || |||||||||||||||| |||||||| |
|
|
| T |
4642494 |
aggaatggatccactatttgttcaatcgccacaccttcttcgtagcatcttttgaaccaacaaactagactagcagtattcttatccaaattacgaacca |
4642593 |
T |
|
| Q |
217 |
aaggtggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaa |
316 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| || || ||||| || |
|
|
| T |
4642594 |
aaggtggcctagcacacaacacttcaagaagtaccacaccgaacgagtacacatctgattttagagttagcctttggaacatatagtactcaggatctaa |
4642693 |
T |
|
| Q |
317 |
ataccctaggctacccttcaccatcgtgctaacatgggttgtagacatccctgtcggtcccacct |
381 |
Q |
| |
|
|||||| ||||| || |||||||| ||||| | ||||| || || |||||||| |||||||||| |
|
|
| T |
4642694 |
atacccaaggcttcctttcaccattgtgctgatgtgggtagtcgatatccctgtaggtcccacct |
4642758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 4635547 - 4635911
Alignment:
| Q |
17 |
cacttgactcattgatggacgttgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaacccctt |
116 |
Q |
| |
|
||||||||||||||| || |||||| ||||||||||||||| |||||| ||||||||||||||| |||||| || ||||| | ||||| ||| | ||| |
|
|
| T |
4635547 |
cacttgactcattgagggtcgttgaattccatcatcatgcaaacaacttaacgccaacttgcaaaaatattcaaaacactcgcccgtgatggaatctctt |
4635646 |
T |
|
| Q |
117 |
aggaatggatccactatttgttcaattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaacca |
216 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| ||||||||| |||| ||| ||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
4635647 |
aggaatggatccaccatttgttcaatcgccacaccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaacca |
4635746 |
T |
|
| Q |
217 |
aaggtggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaa |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||| |||||| || || ||||| || |
|
|
| T |
4635747 |
aaggtggcctagcacacaacacctcaagaagcaccacaccgaatgagtacacgtctgatttaagagtaagcctttggaacatatagtactcaggatctaa |
4635846 |
T |
|
| Q |
317 |
ataccctaggctacccttcaccatcgtgctaacatgggttgtagacatccctgtcggtcccacct |
381 |
Q |
| |
|
|||||| | ||| ||||| || || ||||| || ||||| || || || |||||||||||||||| |
|
|
| T |
4635847 |
ataccccaagcttcccttaacaattgtgctgacgtgggtagtcgatatacctgtcggtcccacct |
4635911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 36 - 379
Target Start/End: Complemental strand, 4785242 - 4784899
Alignment:
| Q |
36 |
cgttgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaaccccttaggaatggatccactattt |
135 |
Q |
| |
|
|||||| ||||||||||||||| |||| | ||| ||| | |||||| ||||||| ||||| ||| |||||| | | | ||| || ||||| || | |
|
|
| T |
4785242 |
cgttgatttccatcatcatgcaaacaatttaacaccatttgacaataacatttcaaacactcacttgttatagaatctttaatgaacgggtccaccatat |
4785143 |
T |
|
| Q |
136 |
gttcaattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaa |
235 |
Q |
| |
|
||||||| ||| |||||||| ||| ||| ||| |||| || | | | ||||||| | |||||||||||| ||||||||| || ||||| |||||||| |
|
|
| T |
4785142 |
cttcaattaccataccttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttcttatccaaagaacgaaccaacgggggtctcgcacacaa |
4785043 |
T |
|
| Q |
236 |
cacctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaaataccctaggctacccttc |
335 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||| |||||||| | |||||| |||| || |||||||||||||||||||| || ||||| ||| |
|
|
| T |
4785042 |
cacctcaagaagcacaacaccgaaagagtacacatcagactttagagtcaacctttgtcgcatgtagtattctggatccaaatacccgagactacctttc |
4784943 |
T |
|
| Q |
336 |
accatcgtgctaacatgggttgtagacatccctgtcggtcccac |
379 |
Q |
| |
|
||||| ||||| |||||||| | ||||||||||| |||||||| |
|
|
| T |
4784942 |
accatagtgctgacatgggtcatcgacatccctgtaggtcccac |
4784899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 379
Target Start/End: Complemental strand, 4817671 - 4817328
Alignment:
| Q |
36 |
cgttgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaaccccttaggaatggatccactattt |
135 |
Q |
| |
|
|||||| ||||||||||||||| |||| | ||| ||| | |||||| ||||||| ||||| ||| |||||| | | | ||| || ||||| || | |
|
|
| T |
4817671 |
cgttgatttccatcatcatgcaaacaatttaacaccatttgacaataacatttcaaacactcacttgttatagaatctttaatgaacgggtccaccatat |
4817572 |
T |
|
| Q |
136 |
gttcaattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaa |
235 |
Q |
| |
|
||||||| ||| |||||||| ||| ||| ||| |||| || | | | ||||||| | |||||||||||| |||||||| || ||||| |||||||| |
|
|
| T |
4817571 |
cttcaattaccataccttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttcttatccaaagaccgaaccaacgggggtctcgcacacaa |
4817472 |
T |
|
| Q |
236 |
cacctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaaataccctaggctacccttc |
335 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||| |||||||| | ||||| |||| || |||||||||||||||||||| || ||||| ||| |
|
|
| T |
4817471 |
cacctcaagaagcacaacaccgaaagagtacacatcagactttagagtcaatctttgtcgcatgtagtattctggatccaaatacccgagactacctttc |
4817372 |
T |
|
| Q |
336 |
accatcgtgctaacatgggttgtagacatccctgtcggtcccac |
379 |
Q |
| |
|
||||| ||||| |||||||| | ||||||||||| |||||||| |
|
|
| T |
4817371 |
accatagtgctgacatgggtcatcgacatccctgtaggtcccac |
4817328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 232
Target Start/End: Original strand, 4676737 - 4676930
Alignment:
| Q |
39 |
tgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaaccccttaggaatggatccactatttgtt |
138 |
Q |
| |
|
||||| ||||||| ||||| | |||||||| ||| | |||||||||| ||| |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
4676737 |
tgagtcccatcattatgcaaataactcaacatcaaagttcaataatattacaaaaactcctctatgatagaattccttaggaatggatccactatttgtt |
4676836 |
T |
|
| Q |
139 |
caattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaaccaaaggtggtctagcaca |
232 |
Q |
| |
|
|||||||||| |||| | || ||| ||| |||| ||||||||| ||| | || ||||| || ||||| ||||||||||| || |||||||| |
|
|
| T |
4676837 |
taattgccacatattcaccctaacatctttgaaaccaacaaactaaactagtcgtcttcttgtctaaatcgcgaaccaaaggcggcctagcaca |
4676930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 379
Target Start/End: Original strand, 4862771 - 4862941
Alignment:
| Q |
209 |
acgaaccaaaggtggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattct |
308 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| || |||||||| || ||||| || ||||||||||| | |||||| | | || |||||| |
|
|
| T |
4862771 |
acgaaccaatggtggtctcgcacacaacacctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattct |
4862870 |
T |
|
| Q |
309 |
ggatccaaataccctaggctacccttcaccatcgtgctaacatgggttgtagacatccctgtcggtcccac |
379 |
Q |
| |
|
||||| ||||| || || ||||||||||||| ||||| || || || ||||||| ||||| |||||||| |
|
|
| T |
4862871 |
ggatctaaatatccaagactacccttcaccacggtgctgacgtgagtgatagacattcctgttggtcccac |
4862941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 146 - 379
Target Start/End: Complemental strand, 4698487 - 4698254
Alignment:
| Q |
146 |
cacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaaga |
245 |
Q |
| |
|
||||||||||| ||| ||| ||| ||| || | |||| ||| ||| | ||||| |||||| |||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
4698487 |
cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga |
4698388 |
T |
|
| Q |
246 |
agcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaaataccctaggctacccttcaccatcgtgc |
345 |
Q |
| |
|
||||| ||||| || |||||||| || || ||||| || | |||||| | | || ||||| ||||| |||||||| || |||||||||||| | |||| |
|
|
| T |
4698387 |
agcacaacaccaaaagagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc |
4698288 |
T |
|
| Q |
346 |
taacatgggttgtagacatccctgtcggtcccac |
379 |
Q |
| |
|
| || ||||| | ||||| ||||| |||||||| |
|
|
| T |
4698287 |
tgacgtgggtcatcgacattcctgttggtcccac |
4698254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 283
Target Start/End: Complemental strand, 4713473 - 4713226
Alignment:
| Q |
36 |
cgttgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaaccccttaggaatggatccactattt |
135 |
Q |
| |
|
|||||| |||||||| |||||| |||||||||| ||| | |||||| ||||||| ||||| ||| ||||| || ||| ||| || ||||| || | |
|
|
| T |
4713473 |
cgttgatttccatcaccatgcaaacaactcaacaccatttcacaataacatttcaaacactcacttgttatagagtcctttatgaacgggtccaccatct |
4713374 |
T |
|
| Q |
136 |
gttcaattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaa |
235 |
Q |
| |
|
||||| | ||||||||||| ||| |||||||| |||||| ||| | | || | | |||||||||| | || ||||||||||||| |||||||| |
|
|
| T |
4713373 |
cttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaaggtggtctcgcacacaa |
4713274 |
T |
|
| Q |
236 |
cacctcaagaagcaccacaccgaatgagtacacatcagattttagagt |
283 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||| || ||||| |
|
|
| T |
4713273 |
cacctcaagaagcacaactccgaatgagtacacgtcagacttaagagt |
4713226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 4676945 - 4677000
Alignment:
| Q |
267 |
acatcagattttagagttagcctttggagcatataatattctggatccaaataccc |
322 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
4676945 |
acatccgattttagagttagcctttggagcatgtaatattcaggatccaaataccc |
4677000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 283
Target Start/End: Complemental strand, 4854843 - 4854596
Alignment:
| Q |
36 |
cgttgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaaccccttaggaatggatccactattt |
135 |
Q |
| |
|
|||||| |||||||| |||||| |||||||||| ||| | |||||| ||||||| ||||| ||| ||||| || ||| |||||| ||||| || | |
|
|
| T |
4854843 |
cgttgatttccatcaccatgcaaacaactcaacaccatttgacaataaaatttcaaacactcacttgttatagagtcctttatgaatgggtccaccatct |
4854744 |
T |
|
| Q |
136 |
gttcaattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaa |
235 |
Q |
| |
|
||||| | ||| ||||||| ||| |||||||| |||||| ||| | | || | ||||||||||| | || ||||||||||||| |||||||| |
|
|
| T |
4854743 |
cttcaactatcactccttcattgtaacattttttgaacaaagcaaccatgttcacttttttcttatccaataaatgatccaaaggtggtctcgcacacaa |
4854644 |
T |
|
| Q |
236 |
cacctcaagaagcaccacaccgaatgagtacacatcagattttagagt |
283 |
Q |
| |
|
|| ||||||||| || ||||||| |||||||||||||| |||||||| |
|
|
| T |
4854643 |
catctcaagaagtacatcaccgaaagagtacacatcagactttagagt |
4854596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 4713203 - 4713130
Alignment:
| Q |
306 |
tctggatccaaataccctaggctacccttcaccatcgtgctaacatgggttgtagacatccctgtcggtcccac |
379 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| ||||| ||||| || | || |||||||| |||||||| |
|
|
| T |
4713203 |
tctggatccaaatatcctatactacccttcaccatagtgctgacatgagtcattgatatccctgttggtcccac |
4713130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 4847160 - 4847112
Alignment:
| Q |
304 |
attctggatccaaataccctaggctacccttcaccatcgtgctaacatg |
352 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||| ||||| ||||| |
|
|
| T |
4847160 |
attctggatccaaatatcctatactacccttcaccatagtgcttacatg |
4847112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 18927165 - 18926801
Alignment:
| Q |
17 |
cacttgactcattgatggacgttgagttccatcatcatgcacacaactcaacgccaacttgcaataatatttcaagcactcctctgtgatagaacccctt |
116 |
Q |
| |
|
||||||| ||||||| || |||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| || || | |||||||||| |||| |
|
|
| T |
18927165 |
cacttgattcattgagggtcgttgagtcccatcatcatgcaaacaactcaacgccaacttgcagtaatatttcaaacattcatttgtgatagaatccctc |
18927066 |
T |
|
| Q |
117 |
aggaatggatccactatttgttcaattgccacaccttcatcgtagcattttttaaacaaacaaactagacttgctgtattcttatccaaatcacgaacca |
216 |
Q |
| |
|
||||||||||| || || |||| ||||| |||||||||||||| ||| ||| |||| ||||||||||||| || || |||||||| ||||| ||||||| |
|
|
| T |
18927065 |
aggaatggatctacgatctgtttaattggaacaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaacca |
18926966 |
T |
|
| Q |
217 |
aaggtggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaa |
316 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| || || ||||| || |
|
|
| T |
18926965 |
aaggtggccttgcacacaatacctcaagaagcaccacaccgaatgagtacacgtcagattttagggtaagcctttggagcatatagtactcaggatctaa |
18926866 |
T |
|
| Q |
317 |
ataccctaggctacccttcaccatcgtgctaacatgggttgtagacatccctgtcggtcccacct |
381 |
Q |
| |
|
|||||| || || ||||||||||| ||||| |||||||| || || ||||| || |||||||||| |
|
|
| T |
18926865 |
atacccaagactccccttcaccattgtgctgacatgggtagttgatatccccgttggtcccacct |
18926801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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