View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8895_low_1 (Length: 784)
Name: NF8895_low_1
Description: NF8895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8895_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 3e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 535 - 769
Target Start/End: Complemental strand, 26642734 - 26642500
Alignment:
| Q |
535 |
gaaaagttgtaattaaattaattcccatgcctttatcat--gtcatactaagaaagaagttaattatatgagaatgaaatgtttgtgttcaggtaattgc |
632 |
Q |
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| T |
26642734 |
gaaaagttgtaattaaattaatttctatgcctttatcatatgtcatacttataaagaagttaatcatatgagaaagaaatgt--gtgttcaggtaattgc |
26642637 |
T |
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| Q |
633 |
tggaattgatgtcgcagtgagatcaatgaaagtcggtggtattcgtagagtcgtcatacctccatcacttgggtatcagaacacatcacaggaacctatc |
732 |
Q |
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| T |
26642636 |
tggaattgatgtggcagtgcgatcaatgaaagtcggtggtattcgtagagtcgtcatacctccatcacttgggtatcagaacacatcacaggaacctatc |
26642537 |
T |
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| Q |
733 |
ccgcctaatgtaagaatccttttatgatccagaatta |
769 |
Q |
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| T |
26642536 |
ccacctaatgtaagaatccttttatgatccagaatta |
26642500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 46 - 241
Target Start/End: Complemental strand, 26642968 - 26642770
Alignment:
| Q |
46 |
ttatgattttagtaaatgttgttacattgaaggttgagattcattactatggtagacttgcagcaaaacaaggatggcgttttgattcaacctatgacca |
145 |
Q |
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| T |
26642968 |
ttatgattttagtaaatgtttttatattgaaggttgagattcattactatggtagacttgcagcaaaacaaggatggcgttttgattcaacctatgacca |
26642869 |
T |
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| Q |
146 |
caaagatgagaatggtgatcctaatccttttgtctttgtccttggctctggtaaggtaa--gcttaattataaccagcaaa-ttggattggcgtttgac |
241 |
Q |
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| T |
26642868 |
caaagatgagaatggtgatcctaatccttttgtctttgtccttggctctggtaaggtaaatgcttgattataaccagcaaatttggattggcttttgac |
26642770 |
T |
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