View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8895_low_10 (Length: 387)
Name: NF8895_low_10
Description: NF8895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8895_low_10 |
 | |
|
| [»] scaffold0691 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 3302990 - 3303368
Alignment:
| Q |
1 |
acttgttcatcatcttcatgcattaaatgacagaaactttgatctttcattcttttaatgatcacttcacgcaacacatcatggacttgacaacgtcgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3302990 |
acttgttcatcatcttcatgcattaaatgacagaaactttgatctttcatttttttaatgatcacttcacgcaacacatcatggacttgacaacttcgga |
3303089 |
T |
|
| Q |
101 |
ctttcccatcaaagccaagtacagaagcattaaccaaacttctttgaattaactccgtcaggtactcttcagcaacttcctccaatggtcttgtcacctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
3303090 |
ctttcccatcaaagccaagtacagaagcattaaccaaacttctttgaattaactctgtcaggtactcttcagcaacttcctccaatagttttgtcccctc |
3303189 |
T |
|
| Q |
201 |
attcctaacaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttc |
300 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3303190 |
cttcttaacaaacccttctgccatccattgccgagtaagtctcttccgtttgatggagtagtcctcaggatatataccaaaatatagcatgcatgatttc |
3303289 |
T |
|
| Q |
301 |
aaatggtaaggcaaatcatcataactaagagataaaattcttattagactagtcaagtgcacattgcgctctaactcca |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3303290 |
aaatggtaaggcaaatcatcataactaagagataaaattcttatcagactagtcaagtgcacattgcgctctaactcca |
3303368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 380
Target Start/End: Original strand, 3321286 - 3321656
Alignment:
| Q |
10 |
tcatcttcatgcattaaatgacagaaactttgatctttcattcttttaatgatcacttcacgcaacacatcatggacttgacaacgtcggactttcccat |
109 |
Q |
| |
|
||||||| |||||||| || |||||||||| |||||||||| || ||| ||||||||||||||||| |||||| |||||| | | || ||||||| |
|
|
| T |
3321286 |
tcatctttatgcattagataacagaaacttaaatctttcatttttctaaggatcacttcacgcaacaaatcatgaacttgaaattttttgatcttcccat |
3321385 |
T |
|
| Q |
110 |
caaagccaagtacagaagcattaaccaaacttctttgaattaactccgtcaggtactcttcagcaacttcctccaatggtcttgtcacctcattcctaac |
209 |
Q |
| |
|
||||||| | | ||| ||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
3321386 |
caaagccgactctggaaacattaaccaaacttctttgtatcaactctgtcaggtactcttctgcaacttcctccaatggtcttatctcctcattcttaac |
3321485 |
T |
|
| Q |
210 |
aaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaatggtaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3321486 |
aaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatatagcatgcatgatttcaaatggtaa |
3321585 |
T |
|
| Q |
310 |
ggcaaatcatcataactaagagataaaattcttattagactagtcaagtgcacattgcgctctaactccat |
380 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
3321586 |
ggcaaatcatcataactaagagataaaatctttgttagactattcaagtgcacattgtgctctaactccat |
3321656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 3 - 380
Target Start/End: Original strand, 3309680 - 3310057
Alignment:
| Q |
3 |
ttgttcatcatcttcatgcattaaatgacagaaactttgatctttcattcttttaatgatcacttcacgcaacacatcatggacttgacaacgtcggact |
102 |
Q |
| |
|
||||||||||| || ||||||||||| || || ||| |||||||||| || |||||||||| | |||||| ||||| ||||||||||| | |||| |
|
|
| T |
3309680 |
ttgttcatcatatttgtgcattaaatggcaaaagcttaaatctttcatttttctaatgatcacctggtgcaacaaatcattgacttgacaacttttgact |
3309779 |
T |
|
| Q |
103 |
ttcccatcaaagccaagtacagaagcattaaccaaacttctttgaattaactccgtcaggtactcttcagcaacttcctccaatggtcttgtcacctcat |
202 |
Q |
| |
|
||||||||||| |||| | ||| | | |||||||||||| || | ||||| ||||||||||||||||||||||||||||||| | | ||| |||||| |
|
|
| T |
3309780 |
ttcccatcaaaaccaactctggaaacctgaaccaaacttctctgtaccaactctgtcaggtactcttcagcaacttcctccaatgatttagtctcctcat |
3309879 |
T |
|
| Q |
203 |
tcctaacaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaa |
302 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
3309880 |
tcataacaaacccttcagccatccattgccgagtaagtctcttccgattgatggtgtagtcctcaggatatataccaaaatacagcatgcaagatttcaa |
3309979 |
T |
|
| Q |
303 |
atggtaaggcaaatcatcataactaagagataaaattcttattagactagtcaagtgcacattgcgctctaactccat |
380 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| || ||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
3309980 |
gtggtgaggcaaatcatcataactaagagataaaatctttgttagactagtcaaatgcacgttgtgctctaactccat |
3310057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 3356411 - 3356790
Alignment:
| Q |
1 |
acttgttcatcatcttcatgcattaaatgacagaaactttgatctttcattcttttaatgatcacttcacgcaacacatcatggacttgacaacgtcgga |
100 |
Q |
| |
|
|||||||||||| || |||||| | ||||||| |||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||| | | | |
|
|
| T |
3356411 |
acttgttcatcacctccatgcactgaatgacaaaaacttaaatctttcatttttttaatgaccacttcacgcaacaaatcatggacttgacatcttttaa |
3356510 |
T |
|
| Q |
101 |
ctttcccatcaaagccaagtacagaagcattaaccaaacttctttgaattaactccgtcaggtactcttcagcaacttcctccaatggtcttgtcacctc |
200 |
Q |
| |
|
|||||||||||||||||||| ||| | | |||||||||||| || | ||||| ||| ||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
3356511 |
ctttcccatcaaagccaagtttggaaacctgaaccaaacttctctgtaccaactctatcaagtactcttcagcaacttcctcgaatggtcttgtgtgctc |
3356610 |
T |
|
| Q |
201 |
attcctaacaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttc |
300 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| ||||||||| || || || ||| ||||||||| ||||| || ||||| || | |||||| |||||| |
|
|
| T |
3356611 |
attcttaacaaacccttcagccatccattgcctagtaagtctttttcgtttaatgatgtagtcctctggatacatgccaaagtataacatgcaggatttc |
3356710 |
T |
|
| Q |
301 |
aaatggtaaggcaaatcatcataactaagagataaaattcttattagactagtcaagtgcacattgcgctctaactccat |
380 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3356711 |
agatggtaaggcaaatcatcataactaagacttaaaatccttattatactagtcaagtgcacattgcgctctaactccat |
3356790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 3202025 - 3201646
Alignment:
| Q |
1 |
acttgttcatcatcttcatgcattaaatgacagaaactttgatctttcattcttttaatgatcacttcacgcaacacatcatggacttgacaacgtcgga |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||| || || ||| ||||| |||| || ||| ||||||||||||||||| || |||||||||||||| || |
|
|
| T |
3202025 |
acttgttcatcaccttcatgcattaaatggcaaaagcttaaatcttgcatttttctaaggatcacttcacgcaacaaattatggacttgacaactcttga |
3201926 |
T |
|
| Q |
101 |
ctttcccatcaaagccaagtacagaagcattaaccaaacttctttgaattaactccgtcaggtactcttcagcaacttcctccaatggtcttgtcacctc |
200 |
Q |
| |
|
|||||||||||| |||| | ||| ||| || |||||||||||| || ||||| |||| ||||||||||||||| | |||| ||| | |||| |
|
|
| T |
3201925 |
ttttcccatcaaaaccaactttggaaacatgaatcaaacttctttgtatcaactctgtcaagtactcttcagcaacgttctccggattccttctttcctc |
3201826 |
T |
|
| Q |
201 |
attcctaacaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttc |
300 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
3201825 |
acacctaacaaacccttcagccatccattgccgagtaagtctcttcgtagtgatggtgtagtcctcgggatatataccaaaatacagcatgcatgatttc |
3201726 |
T |
|
| Q |
301 |
aaatggtaaggcaaatcatcataactaagagataaaattcttattagactagtcaagtgcacattgcgctctaactccat |
380 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
3201725 |
aaatggctaggcaaatcatcgtaacttagagataaaatctttattagacttgtcaaatgcacattgcgctctaactccat |
3201646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 5 - 380
Target Start/End: Complemental strand, 3722621 - 3722247
Alignment:
| Q |
5 |
gttcatcatcttcatgcattaaatgacagaaactttgatctttcattcttttaatgatcacttcacgcaacacatcatggacttgacaacgtcggacttt |
104 |
Q |
| |
|
|||||||| ||||||||| | |||| || ||||| |||||||||| ||||||| | || ||||| ||||| ||||||||||||||| | | ||||| |
|
|
| T |
3722621 |
gttcatcaccttcatgcactgaatggcaaaaactaaaatctttcatttttttaataaccatttcacacaacaaatcatggacttgacatcttttaacttt |
3722522 |
T |
|
| Q |
105 |
cccatcaaagccaagtacagaagcattaaccaaacttctttgaattaactccgtcaggtactcttcagcaacttcctccaatggtcttgtcacctcattc |
204 |
Q |
| |
|
|||||||||||||||| ||| | | |||||||||||| || | ||||| ||| ||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
3722521 |
cccatcaaagccaagtttggaaacctgaaccaaacttctctgtaccaactctatcaagtactcttcagcaacttcctcgaatggtcttgtgtgctcattc |
3722422 |
T |
|
| Q |
205 |
ctaacaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcc-tcaggatatataccaaaatagagcatgcatgatttcaaa |
303 |
Q |
| |
|
||||||||||||| ||| |||||| ||||| ||| || || |||||| ||||||| |||||||| || ||||| || | |||||||||||||| | |
|
|
| T |
3722421 |
ttaacaaacccttcagccgg--attgcctagtaattctttttcgtttgatgatgtagtccctcaggatacatgccaaagtataacatgcatgatttcaga |
3722324 |
T |
|
| Q |
304 |
tggtaaggcaaatcatcataactaagagataaaattcttattagactagtcaagtgcacattgcgctctaactccat |
380 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
3722323 |
tggtaaggcaaatcatcataactaagacataaaatccttattatactagtcaaatgcacattgcgctctaactccat |
3722247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 3 - 355
Target Start/End: Original strand, 3220518 - 3220870
Alignment:
| Q |
3 |
ttgttcatcatcttcatgcattaaatgacagaaactttgatctttcattcttttaatgatcacttcacgcaacacatcatggacttgacaacgtcggact |
102 |
Q |
| |
|
|||||||| | |||||||||| ||||| || || ||| |||||||| | || | ||||||||||| |||| || |||||| || ||||||| | ||| |
|
|
| T |
3220518 |
ttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatgatcacttcgcgcatcaaatcatgaacatgacaacttttcact |
3220617 |
T |
|
| Q |
103 |
ttcccatcaaagccaagtacagaagcattaaccaaacttctttgaattaactccgtcaggtactcttcagcaacttcctccaatggtcttgtcacctcat |
202 |
Q |
| |
|
||||||||||| ||| | ||| | | |||||||||||| | || |||| |||| ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
3220618 |
ttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtcatgtactcttccgcaacttcctccaatggtcttgtgtgctcat |
3220717 |
T |
|
| Q |
203 |
tcctaacaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaa |
302 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
3220718 |
tcttaacaaacccttcagccatccattgccgagtaattcttttccgtttgatgacgtagtcctcaggatatataccaaaatataacatacatgatttcaa |
3220817 |
T |
|
| Q |
303 |
atggtaaggcaaatcatcataactaagagataaaattcttattagactagtca |
355 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || || ||||||| ||||| |
|
|
| T |
3220818 |
atggtaaggcaaatcatcataactaagggataatatcctcattagaccagtca |
3220870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 3197413 - 3197779
Alignment:
| Q |
1 |
acttgttcatcatcttcatgcattaaatgacagaaactttgatctttcattcttttaatgatcacttcacgcaacacatcatggacttgacaacgtcgga |
100 |
Q |
| |
|
|||||||| | ||| |||| ||||| ||| || ||||||| |||||||||| || ||| ||| | | | |||||| |||||||||| |||||| | || |
|
|
| T |
3197413 |
acttgttcttgatcctcatacattatatggcaaaaactttcatctttcatttttctaaggattatatgatgcaacaaatcatggactcgacaacttttga |
3197512 |
T |
|
| Q |
101 |
ctttcccatcaaagccaagtacagaagcattaaccaaacttctttgaattaactccgtcaggtactcttcagcaacttcctccaatggtcttgtcacctc |
200 |
Q |
| |
|
|||| ||||||||||||| |||| | | |||||||||| | | || | ||| ||| |||||||||||||||||||||||| | | || | | | |
|
|
| T |
3197513 |
cttttccatcaaagccaacactagaaacttgaaccaaacttgtatatatcagctctttcaagtactcttcagcaacttcctccaaagtttttccctcaac |
3197612 |
T |
|
| Q |
201 |
attcctaacaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttc |
300 |
Q |
| |
|
| | ||||||| ||||| || |||||||||| |||||||||||| | |||||||| || || ||| ||||| ||||||||||| | ||||||| ||| |
|
|
| T |
3197613 |
acacataacaaatccttcggctatccattgcctagtaagtctcttacaattgatggtgtggttctccggatagataccaaaatacaacatgcatagtttt |
3197712 |
T |
|
| Q |
301 |
aaatggtaaggcaaatcatcataactaagagataaaattcttattagactagtcaagtgcacattgc |
367 |
Q |
| |
|
||||| |||| | ||| |||||||| |||||||||| || |||||| ||| || |||||||||| |
|
|
| T |
3197713 |
aaatgacaaggaagatcctcataactccgagataaaatcattgttagacgagtgaaatgcacattgc |
3197779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 338
Target Start/End: Complemental strand, 2808155 - 2808023
Alignment:
| Q |
206 |
taacaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaatg |
305 |
Q |
| |
|
||||||||||||| || |||||||| ||||| | |||||| |||| || ||||||||||| ||||||||||||||||| | ||||| | |||||| | |
|
|
| T |
2808155 |
taacaaacccttcagctatccattgtcgagttaatctcttatgattaatagagtagtcctctggatatataccaaaatacaaaatgcagggtttcaagta |
2808056 |
T |
|
| Q |
306 |
gtaaggcaaatcatcataactaagagataaaat |
338 |
Q |
| |
|
||| ||||| |||| ||||| || |||||||| |
|
|
| T |
2808055 |
gtagggcaagccatcgtaactcagtgataaaat |
2808023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 353
Target Start/End: Original strand, 2837852 - 2837997
Alignment:
| Q |
208 |
acaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaatggt |
307 |
Q |
| |
|
|||||||| || || |||||||||| ||| |||||| | |||| |||||||| ||||| ||||||||||||||||| | ||||||| ||| |||| || |
|
|
| T |
2837852 |
acaaacccctcagctatccattgcctagttagtctcctatgattaatggagtaatcctctggatatataccaaaatacaaaatgcatggttttaaatagt |
2837951 |
T |
|
| Q |
308 |
aaggcaaatcatcataactaagagataaaattcttattagactagt |
353 |
Q |
| |
|
| |||| |||||||| ||||||||||| || |||||||||| |
|
|
| T |
2837952 |
acggcaggctgtcataactgagagataaaatctttgttagactagt |
2837997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 2798249 - 2798153
Alignment:
| Q |
206 |
taacaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaa |
302 |
Q |
| |
|
||||||||||||| || |||||||| ||||| | |||||| ||||||| || ||||||| |||||||||| ||||||| | ||||||| |||||| |
|
|
| T |
2798249 |
taacaaacccttcagctatccattgtcgagttaatctcttatgattgatagaatagtcctgaggatatatagcaaaatacaaaatgcatggtttcaa |
2798153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 352
Target Start/End: Complemental strand, 2769953 - 2769811
Alignment:
| Q |
210 |
aaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaatggtaa |
309 |
Q |
| |
|
||||||||| || ||||||||||| || | |||||| ||| || || ||||| | |||||||||||||||||| | ||||||| |||||| | |||| |
|
|
| T |
2769953 |
aaacccttcagctatccattgccgtgttaatctcttattattaatagaatagtcttgaggatatataccaaaatacaaaatgcatggtttcaagtagtaa |
2769854 |
T |
|
| Q |
310 |
ggcaaatcatcataactaagagataaaattcttattagactag |
352 |
Q |
| |
|
|| | |||||||||||||||| ||||| || ||||||||| |
|
|
| T |
2769853 |
ggaaggccatcataactaagagacaaaatctttgttagactag |
2769811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 2854868 - 2854946
Alignment:
| Q |
14 |
cttcatgcattaaatgacagaaactttgatctttcattcttttaatgatcacttcacgcaacacatcatggacttgaca |
92 |
Q |
| |
|
||||||||| ||||||||||||||| || |||||| || ||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
2854868 |
cttcatgcacgaaatgacagaaacttaaattcttcatttttctaatgatcacttcccgcaataaatcatggacttgaca |
2854946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 338
Target Start/End: Original strand, 2855062 - 2855192
Alignment:
| Q |
208 |
acaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaatggt |
307 |
Q |
| |
|
|||||||| || || |||||||||| ||| |||||| | |||| |||||||| ||||| ||||||||||||||||| | ||||||| ||| |||| || |
|
|
| T |
2855062 |
acaaacccctcagctatccattgcctagttagtctcctatgattaatggagtaatcctctggatatataccaaaatacaaaatgcatggttttaaatagt |
2855161 |
T |
|
| Q |
308 |
aaggcaaatcatcataactaagagataaaat |
338 |
Q |
| |
|
| |||| |||||||| ||||||||||| |
|
|
| T |
2855162 |
acggcaggctgtcataactgagagataaaat |
2855192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 2837653 - 2837736
Alignment:
| Q |
9 |
atcatcttcatgcattaaatgacagaaactttgatctttcattcttttaatgatcacttcacgcaacacatcatggacttgaca |
92 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| || |||||| || ||||||| ||||| ||||| | ||||||||||||||| |
|
|
| T |
2837653 |
atcaccttcatgcacaaaatgacagaaacttaaattcttcatttttctaatgataacttcccgcaataaatcatggacttgaca |
2837736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 2760302 - 2760216
Alignment:
| Q |
6 |
ttcatcatcttcatgcattaaatgacagaaactttgatctttcattcttttaatgatcacttcacgcaacacatcatggacttgaca |
92 |
Q |
| |
|
|||| |||| |||||||| |||| |||||||| ||| |||||| || ||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
2760302 |
ttcaccatcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgaca |
2760216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 338
Target Start/End: Original strand, 5402 - 5534
Alignment:
| Q |
206 |
taacaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatagagcatgcatgatttcaaatg |
305 |
Q |
| |
|
||||||||||||| || |||||||| ||||| | |||||| |||| || || |||||||| ||||||||||||||||| | ||||||| |||||| | |
|
|
| T |
5402 |
taacaaacccttcagctatccattgacgagttaatctcttatgattaatagaatagtcctctggatatataccaaaatacaaaatgcatggtttcaagta |
5501 |
T |
|
| Q |
306 |
gtaaggcaaatcatcataactaagagataaaat |
338 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| |
|
|
| T |
5502 |
gtaaggcaggccatcataactaagtgacaaaat |
5534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 5242 - 5314
Alignment:
| Q |
46 |
ttcattcttttaatgatcacttcacgcaacacatcatggacttgacaacgtcggactttcccatcaaagccaa |
118 |
Q |
| |
|
|||||| || ||||||||||||||||||| | ||||||||||||||| | | |||||||| |||||||||| |
|
|
| T |
5242 |
ttcatttttctaatgatcacttcacgcaataaatcatggacttgacatgtttgaactttcccctcaaagccaa |
5314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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