View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8895_low_16 (Length: 337)

Name: NF8895_low_16
Description: NF8895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8895_low_16
NF8895_low_16
[»] chr2 (6 HSPs)
chr2 (76-322)||(5276225-5276464)
chr2 (9-319)||(18581283-18581586)
chr2 (9-85)||(5278445-5278521)
chr2 (9-319)||(38698225-38698528)
chr2 (12-160)||(13072228-13072376)
chr2 (87-163)||(21206082-21206158)
[»] chr7 (4 HSPs)
chr7 (11-313)||(23100207-23100500)
chr7 (9-319)||(12380696-12380999)
chr7 (11-166)||(6533198-6533351)
chr7 (215-319)||(15678830-15678934)
[»] chr3 (6 HSPs)
chr3 (9-319)||(1418527-1418830)
chr3 (9-319)||(30378337-30378640)
chr3 (93-267)||(43810907-43811074)
chr3 (241-310)||(43650806-43650875)
chr3 (134-166)||(43650952-43650984)
chr3 (250-322)||(43651159-43651231)
[»] chr1 (4 HSPs)
chr1 (9-319)||(9958048-9958351)
chr1 (9-319)||(32177491-32177794)
chr1 (9-157)||(35500714-35500861)
chr1 (74-166)||(37314448-37314539)
[»] chr5 (2 HSPs)
chr5 (9-319)||(41870834-41871137)
chr5 (11-137)||(2753263-2753395)
[»] chr4 (2 HSPs)
chr4 (22-322)||(36103183-36103475)
chr4 (239-322)||(6830995-6831078)
[»] scaffold0103 (1 HSPs)
scaffold0103 (8-162)||(1575-1729)
[»] chr6 (2 HSPs)
chr6 (8-162)||(2638280-2638434)
chr6 (217-313)||(12624368-12624464)
[»] scaffold0552 (1 HSPs)
scaffold0552 (239-322)||(10497-10580)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 76 - 322
Target Start/End: Complemental strand, 5276464 - 5276225
Alignment:
Q  76 tctcttccatactttctttttgcaagtgttcatcaattatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagtgaacactat 175  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||||||||   ||| ||    
T  5276464 tctcttccatactttctttttgtaagtgttcatcaattgtatgatttttatccaatcttattctcaaatcattcaaaatattcatattagt---cac-at 5276369  T
Q  176 gtttgacactattttcctgcagtgtcgaactttgactaataatatgcttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtata 275  Q
    ||||||||||||||||||  ||||||  |||||||||||||   |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5276368 gtttgacactattttcctatagtgtcagactttgactaata---tgcttcaaatcacttaagccctcacttactagcaaacccaaggtactaaaagtata 5276272  T
Q  276 acatttaaacaattaaaaacaaaaacaatatactttgtgaacatatt 322  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||    
T  5276271 acatttaaacaattaacaacaataacagtatactttgtgaacatatt 5276225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 18581283 - 18581586
Alignment:
Q  9 agattattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcat 108  Q
    |||| ||||||| |||||||||| |||  ||||| ||||||| |||||||| | || |||| || |||||||| || | |||||| ||||||||||  ||    
T  18581283 agatcattcttagcaagacatttcacaactgaaactattctacgtaaaactagtctccaacgctctttctctttcacaatttcttcttgcaagtgtctat 18581382  T
Q  109 caattatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagtgaacactatgtttgacactattttcctgcagtgtcgaacttt 208  Q
    ||||| | ||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |    |||||| ||||| |||||| ||  || |    ||||    
T  18581383 caattgtctgatttttatcaaatctcattctcaattcattccaagtattcatattagtca----tatgttcgacaccattttcatgttgtttgagtcttt 18581478  T
Q  209 gactaataatatgcttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatac 308  Q
    |||   ||||||||||| ||||| |||| |||||  || | || |||| |||| ||||| | ||| || |||||||||||| | ||||||||||||||||    
T  18581479 gac---taatatgcttccaatcatttaaaccctcggttgcaagtaaactcaagttactagaggtagaagatttaaacaatttacaacaaaaacaatatac 18581575  T
Q  309 tttgtgaacat 319  Q
    ||||| |||||    
T  18581576 tttgtcaacat 18581586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 5278521 - 5278445
Alignment:
Q  9 agattattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccat 85  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5278521 agattattcttatcaggacatttaacatatgaaaatattctatgtaaaacttgtctacaacactatttctcttccat 5278445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 38698528 - 38698225
Alignment:
Q  9 agattattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcat 108  Q
    |||| ||||||| |||||||| | |||  ||||| ||||||| |||||||| | || |||| || |||||||| || | |||||| ||||||||||  ||    
T  38698528 agatcattcttagcaagacatatcacaactgaaactattctacgtaaaactagtctccaacgctctttctctttcacaatttcttcttgcaagtgtatat 38698429  T
Q  109 caattatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagtgaacactatgtttgacactattttcctgcagtgtcgaacttt 208  Q
    ||||| | ||||||||||| ||||| |||||||| ||||| ||||||||||||||| | |    |||||| ||||| |||||| ||  || |    ||||    
T  38698428 caattgtctgatttttatcaaatctcattctcaattcattccaagtattcatattaatca----tatgttcgacaccattttcatgttgtttgagtcttt 38698333  T
Q  209 gactaataatatgcttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatac 308  Q
    |||   ||||||||||| ||||| |||| |||||  || | || |||| |||| ||||| | ||| || |||||||||||| | ||||||||||||||||    
T  38698332 gac---taatatgcttccaatcatttaaaccctcggttgcaagtaaactcaagttactagaggtagaagatttaaacaatttacaacaaaaacaatatac 38698236  T
Q  309 tttgtgaacat 319  Q
    ||||| |||||    
T  38698235 tttgtcaacat 38698225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 13072228 - 13072376
Alignment:
Q  12 ttattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcatcaa 111  Q
    ||||||||| |||||||||| | |  || || |||||||||||||||||| || |||| || |||||||| || | |||||| ||||||||||| |||||    
T  13072228 ttattcttagcaagacatttcaaaactggaagtattctatgtaaaacttgtctccaacgctctttctctttcacaatttcttcttgcaagtgtttatcaa 13072327  T
Q  112 ttatatgatttttatccaatcttattctcaaatcatttcaagtattcat 160  Q
    ||   ||||||||||| ||||| |||||||| |||||  ||||||||||    
T  13072328 ttgcctgatttttatcaaatctcattctcaattcattctaagtattcat 13072376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 21206158 - 21206082
Alignment:
Q  87 ctttctttttgcaagtgttcatcaattatatgatttttatccaatcttattctcaaatcatttcaagtattcatatt 163  Q
    ||||||| | ||||||||  ||||||| | ||||||||||| ||||||||| |||| | ||| ||||||||||||||    
T  21206158 ctttcttctagcaagtgtctatcaattgtttgatttttatctaatcttattttcaatttattacaagtattcatatt 21206082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 23100207 - 23100500
Alignment:
Q  11 attattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcatca 110  Q
    |||||||||| |||||||||| |||  |||||||||||||||||||| ||| || |||| || |||||||| |||| |||||| ||||||||||  ||||    
T  23100207 attattcttaacaagacatttcacaattgaaaatattctatgtaaaaattgtctccaacgctctttctctttcataatttcttcttgcaagtgtatatca 23100306  T
Q  111 attatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagtgaacactatgtttgacactattttcctgcagtgtcgaactttga 210  Q
    ||| | || |||| |||||| ||||||||||| |||||  ||||||||||||||||      |||||| |  ||||||||| ||   |||   | |||||    
T  23100307 attgtttggttttcatccaaccttattctcaattcattcgaagtattcatattagt----cgtatgttcggaactattttcatg--ttgtttgagtttga 23100400  T
Q  211 ctaataatatgcttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatactt 310  Q
    |   |||| |||||| |||||| ||||||||||||| |||||| || |||| ||||| ||||| || |||||||||||| | |||||||| | |||||||    
T  23100401 c---taatctgcttccaatcacataagccctcacttgctagcatactcaagttactagaagtaaaagatttaaacaatttacaacaaaaatagtatactt 23100497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 12380999 - 12380696
Alignment:
Q  9 agattattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcat 108  Q
    |||| ||||||| |||||||| | |||  ||||| ||||||| |||||||| | || |||| || |||||||| || | |||||| ||||||||||| ||    
T  12380999 agatcattcttagcaagacatatcacaactgaaactattctacgtaaaactagtctccaacgctctttctctttcacaatttcttcttgcaagtgtttat 12380900  T
Q  109 caattatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagtgaacactatgtttgacactattttcctgcagtgtcgaacttt 208  Q
    ||||| | ||||||||||| ||||| |||||||| ||||| ||||||||||||||| | |    |||||| ||||| |||||| ||  || |    ||||    
T  12380899 caattgtctgatttttatcaaatctcattctcaattcattccaagtattcatattaatca----tatgttcgacaccattttcatgttgtttgagtcttt 12380804  T
Q  209 gactaataatatgcttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatac 308  Q
    |||   ||||||||||| ||||| |||| |||||| || | || |||| |||| ||||| | ||| || |||||||||||| | ||||||||||||||||    
T  12380803 gac---taatatgcttccaatcatttaaaccctcagttgcaagtaaactcaagttactagaggtagaagatttaaacaatttacaacaaaaacaatatac 12380707  T
Q  309 tttgtgaacat 319  Q
    ||||| |||||    
T  12380706 tttgtcaacat 12380696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 6533351 - 6533198
Alignment:
Q  11 attattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcatca 110  Q
    |||||||||| |||||||||| |||    ||||||||||||||||  |||| || ||||||| |||||| ||| || ||| ||||||||||||   ||||    
T  6533351 attattcttagcaagacatttcacaacgaaaaatattctatgtaa--cttgtcttcaacactctttctcatccctaatttgtttttgcaagtgcctatca 6533254  T
Q  111 attatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagt 166  Q
    ||| | ||| ||||||| ||| |||||||| | ||||   ||||||||||||||||    
T  6533253 attgtctgaattttatctaatattattctctattcatccaaagtattcatattagt 6533198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 15678830 - 15678934
Alignment:
Q  215 taatatgcttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatactttgtg 314  Q
    ||||||||||| ||||| |||| |||||| || | || |||| |||| ||||| | ||| || |||||||||||| | |||||||||||||||||||||     
T  15678830 taatatgcttccaatcatttaaaccctcagttgcaagtaaactcaagttactagaggtagaagatttaaacaatttacaacaaaaacaatatactttgtc 15678929  T
Q  315 aacat 319  Q
    |||||    
T  15678930 aacat 15678934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 1418527 - 1418830
Alignment:
Q  9 agattattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcat 108  Q
    |||| ||||||| |||||||||| |||  ||||| ||||||| |||||||| | || |||| || |||||||| || | |||||| ||||||||||  ||    
T  1418527 agatcattcttagcaagacatttcacaactgaaactattctacgtaaaactagtctccaacgctctttctctttcacaatttcttcttgcaagtgtctat 1418626  T
Q  109 caattatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagtgaacactatgtttgacactattttcctgcagtgtcgaacttt 208  Q
    ||||| | ||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |    |||||| ||||| |||||| ||  || |    ||||    
T  1418627 caattgtctgatttttatcaaatctcattctcaattcattccaagtattcatattagtca----tatgttcgacaccattttcatgttgtttgagtcttt 1418722  T
Q  209 gactaataatatgcttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatac 308  Q
    |||   ||||||||||| ||||| |||| |||||  || | || |||| |||| ||||| | ||| || |||||||||||| | ||||||||||||||||    
T  1418723 gac---taatatgcttccaatcatttaaaccctcggttgcaagtaaactcaagttactagaggtagaagatttaaacaatttacaacaaaaacaatatac 1418819  T
Q  309 tttgtgaacat 319  Q
    ||||| |||||    
T  1418820 tttgtcaacat 1418830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 30378640 - 30378337
Alignment:
Q  9 agattattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcat 108  Q
    |||| ||||||| |||||||||| |||  ||||| ||||||| |||||||| | || |||| || |||||||| || | |||||| ||||||||||  ||    
T  30378640 agatcattcttagcaagacatttcacaactgaaactattctacgtaaaactagtctccaacgctctttctctttcacaatttcttcttgcaagtgtctat 30378541  T
Q  109 caattatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagtgaacactatgtttgacactattttcctgcagtgtcgaacttt 208  Q
    ||||| | ||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |    |||||| ||||| |||||| ||  || |    ||||    
T  30378540 caattgtctgatttttatcaaatctcattctcaattcattccaagtattcatattagtca----tatgttcgacaccattttcatgttgtttgagtcttt 30378445  T
Q  209 gactaataatatgcttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatac 308  Q
    |||   ||||||||||| ||||| |||| |||||  || | || |||| |||| ||||| | ||| || |||||||||||| | ||||||||||||||||    
T  30378444 gac---taatatgcttccaatcatttaaaccctcggttgcaagtaaactcaagttactagaggtagaagatttaaacaatttacaacaaaaacaatatac 30378348  T
Q  309 tttgtgaacat 319  Q
    ||||| |||||    
T  30378347 tttgtcaacat 30378337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 267
Target Start/End: Complemental strand, 43811074 - 43810907
Alignment:
Q  93 ttttgcaagtgttcatcaattatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagtgaacactatgtttgacactattttcc 192  Q
    ||||||||||||| || |||| | | |||||||||||||||||||| ||| |||||  || ||||||||||||  |    |||||| ||||||||||||     
T  43811074 ttttgcaagtgtttataaattgtctaatttttatccaatcttattcacaattcattctaactattcatattaggta----tatgttcgacactattttca 43810979  T
Q  193 tgcagtgtcgaactttgactaataatatgcttcaaatcacttaagccctcacttactagcaaacccaagatacta 267  Q
    ||  || |    ||||| ||||||   |||||| ||||||||||||| |||||| ||||||||| |||| |||||    
T  43810978 tgttgtttgagtctttggctaata---tgcttccaatcacttaagccatcacttgctagcaaacgcaagttacta 43810907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 43650875 - 43650806
Alignment:
Q  241 tcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatactt 310  Q
    |||| ||||||||||| |||| ||||| ||||| || |||| ||||||| | ||||||||||||||||||    
T  43650875 tcacatactagcaaactcaagttactagaagtaaaagatttgaacaatttacaacaaaaacaatatactt 43650806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 43650952 - 43650984
Alignment:
Q  134 tattctcaaatcatttcaagtattcatattagt 166  Q
    ||||||||| |||||||||||||||||||||||    
T  43650952 tattctcaattcatttcaagtattcatattagt 43650984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 43651159 - 43651231
Alignment:
Q  250 agcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatactttgtgaacatatt 322  Q
    ||||||| |||| ||||| ||||| || |||| ||||||| | |||||||||||| ||||| || ||||||||    
T  43651159 agcaaactcaagttactagaagtaaaaaatttgaacaatttacaacaaaaacaatgtacttcgtcaacatatt 43651231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 9958351 - 9958048
Alignment:
Q  9 agattattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcat 108  Q
    |||| ||||||| |||||||||| |||  ||||| ||||||| |||||||| | || |||| || ||| |||| || | |||||| ||||||||||| ||    
T  9958351 agatcattcttagcaagacatttcacaactgaaactattctacgtaaaactagtctccaacgctctttttctttcacaatttcttcttgcaagtgtttat 9958252  T
Q  109 caattatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagtgaacactatgtttgacactattttcctgcagtgtcgaacttt 208  Q
    ||||| | ||||||||||| ||||| |||||||| ||||| ||||||||||||||| | |    |||||| ||||| |||||| ||  || |    ||||    
T  9958251 caattgtctgatttttatcaaatctcattctcaattcattccaagtattcatattactca----tatgttcgacaccattttcatgttgtttgagtcttt 9958156  T
Q  209 gactaataatatgcttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatac 308  Q
    |||   ||||||||||| ||||| |||| |||||| || | || |||| |||| ||||| | ||| || |||||||||||| | ||||||||||||||||    
T  9958155 gac---taatatgcttccaatcatttaaaccctcagttgcaagtaaactcaagttactagaggtagaagatttaaacaatttacaacaaaaacaatatac 9958059  T
Q  309 tttgtgaacat 319  Q
    ||||| |||||    
T  9958058 tttgtcaacat 9958048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 32177491 - 32177794
Alignment:
Q  9 agattattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcat 108  Q
    |||| ||||||| |||||||||| |||  ||||| ||||||| |||||||| | || |||| || ||| |||| || | |||||| ||||||||||| ||    
T  32177491 agatcattcttagcaagacatttcacaactgaaactattctacgtaaaactagtctccaacgctctttttctttcacaatttcttcttgcaagtgtttat 32177590  T
Q  109 caattatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagtgaacactatgtttgacactattttcctgcagtgtcgaacttt 208  Q
    ||||| | ||||||||||| ||||| |||||||| ||||| ||||||||||||||| | |    |||||| ||||| |||||| ||  || |    ||||    
T  32177591 caattgtctgatttttatcaaatctcattctcaattcattccaagtattcatattactca----tatgttcgacaccattttcatgttgtttgagtcttt 32177686  T
Q  209 gactaataatatgcttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatac 308  Q
    |||   ||||||||||| ||||| |||| |||||| || | || |||| |||| ||||| | ||| || |||||||||||| | ||||||||||||||||    
T  32177687 gac---taatatgcttccaatcatttaaaccctcagttgcaagtaaactcaagttactagaggtagaagatttaaacaatttacaacaaaaacaatatac 32177783  T
Q  309 tttgtgaacat 319  Q
    ||||| |||||    
T  32177784 tttgtcaacat 32177794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 35500714 - 35500861
Alignment:
Q  9 agattattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcat 108  Q
    |||||||||||| |||||||||| ||| |   ||||||||||||||||||||| ||||||| || |||||||| || | |||||| ||||||||||| ||    
T  35500714 agattattcttagcaagacatttcaca-acataaatattctatgtaaaacttgtctacaacgctctttctctttcacaatttcttcttgcaagtgtttat 35500812  T
Q  109 caattatatgatttttatccaatcttattctcaaatcatttcaagtatt 157  Q
    ||||| | ||||||||||| ||| |||||||||| ||||| ||||||||    
T  35500813 caattgtctgatttttatcaaattttattctcaattcattccaagtatt 35500861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 37314539 - 37314448
Alignment:
Q  74 tttctcttccatactttctttttgcaagtgttcatcaattatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagt 166  Q
    |||||||| |||| ||| || ||||||||||| ||||||| ||||| ||| ||||||| ||||||| || ||||| |||| ||||||||||||    
T  37314539 tttctctttcataattt-ttcttgcaagtgtttatcaattttatgaatttaatccaattttattcttaactcattccaagcattcatattagt 37314448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 41871137 - 41870834
Alignment:
Q  9 agattattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcat 108  Q
    |||| ||||||| |||||||||| |||  ||||| ||||||| |||||| | | || |||| || |||||||| |  | |||||| ||| ||||||  ||    
T  41871137 agatcattcttagcaagacatttcacaactgaaactattctacgtaaaattagtctccaacgctctttctctttctcaatttcttcttgtaagtgtctat 41871038  T
Q  109 caattatatgatttttatccaatcttattctcaaatcatttcaagtattcatattagtgaacactatgtttgacactattttcctgcagtgtcgaacttt 208  Q
    ||||| | ||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |    |||||| ||||| |||||| ||  || |    ||||    
T  41871037 caattgtctgatttttatcaaatctcattctcaattcattccaagtattcatattagtca----tatgttcgacaccattttcatgttgtttgagtcttt 41870942  T
Q  209 gactaataatatgcttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatac 308  Q
    |||   ||||||||||| ||||| |||| |||||  || | || |||| |||| ||||| | ||| || |||||||||||| | ||||||||||||||||    
T  41870941 gac---taatatgcttccaatcatttaaaccctcggttgcaagtaaactcaagttactagaggtagaagatttaaacaatttacaacaaaaacaatatac 41870845  T
Q  309 tttgtgaacat 319  Q
    ||||| |||||    
T  41870844 tttgtcaacat 41870834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 2753263 - 2753395
Alignment:
Q  11 attattcttatcaagacatttaacatatgaaaa-tattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttca-- 107  Q
    |||||||||| |||||||||| |||  | |||| |||| ||||||||||| | || ||||||| |||||||| |||| |||||| || |||||||| |      
T  2753263 attattcttagcaagacatttcacaattaaaaaatattatatgtaaaactcgtctccaacactctttctctttcataatttcttcttacaagtgtttatc 2753362  T
Q  108 ---tcaattatatgatttttatccaatcttatt 137  Q
       |||||| |||||||| ||||||||||||||    
T  2753363 aattcaattgtatgatttgtatccaatcttatt 2753395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 322
Target Start/End: Complemental strand, 36103475 - 36103183
Alignment:
Q  22 caagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttcatcaattatatgatt 121  Q
    |||||||||| |||  ||||||||||  |||||||||||  || ||| ||| |||||||| |||| |||||| || |||||||| ||||||||| | |||    
T  36103475 caagacatttcacaattgaaaatattaaatgtaaaacttctctccaaaactctttctctttcataatttcttcttccaagtgtttatcaattattttatt 36103376  T
Q  122 tttatccaatcttattctcaaatcatttcaagtattcatattagtgaacactatgtttgacactattttcctgcagtgtcgaactttgactaataatatg 221  Q
    |||||||||||||||| |||| ||| ||||||||||| || |||| |    |||| | |||||||||||  ||   |||    || |  |   |||||||    
T  36103375 tttatccaatcttattttcaattca-ttcaagtattcgtaatagtca----tatggtcgacactatttttatgttatgtgagtctctagc---taatatg 36103284  T
Q  222 cttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatactttgtgaacatat 321  Q
    |||  ||||||||||||||||| || ||||||||| |||| || || ||||| || |||||||||||| | |||||||||||||||| |||| || ||||    
T  36103283 ctttcaatcacttaagccctcatttgctagcaaactcaagttaatagaagtagaagatttaaacaatttacaacaaaaacaatataccttgtcaatatat 36103184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 6830995 - 6831078
Alignment:
Q  239 cctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatactttgtgaacatatt 322  Q
    |||||||| ||||||||| |||| | ||| ||||| || |||||||||||| |  |||||||||||| ||||||| ||||||||    
T  6830995 cctcacttgctagcaaactcaagtttctagaagtagaagatttaaacaattcaccacaaaaacaataaactttgtcaacatatt 6831078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 1729 - 1575
Alignment:
Q  8 tagattattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttca 107  Q
    ||||||||||||| ||||| |||| ||   |||||||||| |||||||||||||  |  ||||||  ||||||  || | ||| ||||| |||||||| |    
T  1729 tagattattcttagcaagatatttcaccactgaaaatattatatgtaaaacttgtatcgaacactcattctctatcacaatttattttttcaagtgttta 1630  T
Q  108 tcaattatatgatttttatccaatcttattctcaaatcatttcaagtattcatat 162  Q
    |||||| | |||| ||||||  |||||||| |||| ||||| ||||||| |||||    
T  1629 tcaattgtttgatgtttatcacatcttattttcaattcattccaagtatacatat 1575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 2638280 - 2638434
Alignment:
Q  8 tagattattcttatcaagacatttaacatatgaaaatattctatgtaaaacttgcctacaacactatttctcttccatactttctttttgcaagtgttca 107  Q
    ||||||||||||| ||||| |||| ||   |||||||||| |||||||||||||  |  ||||||  ||||||  || | ||| ||||| |||||||| |    
T  2638280 tagattattcttagcaagatatttcaccactgaaaatattatatgtaaaacttgtatcgaacactcattctctatcacaatttattttttcaagtgttta 2638379  T
Q  108 tcaattatatgatttttatccaatcttattctcaaatcatttcaagtattcatat 162  Q
    |||||| | |||| ||||||  |||||||| |||| ||||| ||||||| |||||    
T  2638380 tcaattgtttgatgtttatcacatcttattttcaattcattccaagtatacatat 2638434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 12624464 - 12624368
Alignment:
Q  217 atatgcttcaaatcacttaagccctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatactttgt 313  Q
    ||||||||| ||||| |||||||||   || ||||||||| ||||  |||| ||||| ||  ||| ||||||| | |||||||||||||||||||||    
T  12624464 atatgcttccaatcagttaagcccttgtttgctagcaaactcaagtcactagaagtagaagtttttaacaatttacaacaaaaacaatatactttgt 12624368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 10497 - 10580
Alignment:
Q  239 cctcacttactagcaaacccaagatactaaaagtataacatttaaacaattaaaaacaaaaacaatatactttgtgaacatatt 322  Q
    |||||||| ||||||||| |||| | ||| ||||| || |||||||||||| |  |||||||||||| ||||||| ||||||||    
T  10497 cctcacttgctagcaaactcaagtttctagaagtagaagatttaaacaattcaccacaaaaacaataaactttgtcaacatatt 10580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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