View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8895_low_20 (Length: 287)

Name: NF8895_low_20
Description: NF8895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8895_low_20
NF8895_low_20
[»] chr3 (26 HSPs)
chr3 (1-287)||(823208-823495)
chr3 (159-287)||(1652818-1652946)
chr3 (1-150)||(13018098-13018246)
chr3 (178-285)||(5556593-5556701)
chr3 (161-287)||(47945727-47945853)
chr3 (172-279)||(27398987-27399095)
chr3 (141-284)||(30935303-30935447)
chr3 (172-285)||(33143893-33144007)
chr3 (229-287)||(37123403-37123461)
chr3 (229-287)||(39021278-39021336)
chr3 (141-287)||(14879456-14879603)
chr3 (229-287)||(17550978-17551036)
chr3 (229-287)||(19176523-19176581)
chr3 (12-64)||(25647930-25647982)
chr3 (239-286)||(43012397-43012444)
chr3 (245-287)||(14755283-14755325)
chr3 (248-285)||(9584074-9584111)
chr3 (238-286)||(14193962-14194010)
chr3 (12-79)||(25594331-25594398)
chr3 (248-287)||(20611804-20611843)
chr3 (206-284)||(25594499-25594577)
chr3 (12-64)||(33143733-33143787)
chr3 (229-286)||(40023574-40023631)
chr3 (229-286)||(45398818-45398875)
chr3 (12-64)||(14194177-14194229)
chr3 (251-287)||(30127283-30127319)
[»] chr7 (32 HSPs)
chr7 (1-207)||(40292819-40293025)
chr7 (161-287)||(13311860-13311986)
chr7 (172-287)||(3478373-3478488)
chr7 (179-287)||(9428057-9428165)
chr7 (140-287)||(8745174-8745321)
chr7 (204-287)||(12480907-12480991)
chr7 (162-287)||(11379063-11379187)
chr7 (172-287)||(46133221-46133338)
chr7 (167-287)||(6716677-6716796)
chr7 (140-287)||(38485577-38485723)
chr7 (2-278)||(36449113-36449383)
chr7 (140-287)||(24324710-24324858)
chr7 (161-286)||(47456956-47457081)
chr7 (161-285)||(48058588-48058712)
chr7 (229-287)||(9349770-9349828)
chr7 (12-70)||(22567912-22567970)
chr7 (230-287)||(10244203-10244260)
chr7 (161-279)||(22568045-22568164)
chr7 (137-287)||(34389983-34390135)
chr7 (197-284)||(42533223-42533309)
chr7 (229-287)||(6584930-6584988)
chr7 (13-98)||(23983416-23983502)
chr7 (239-285)||(33435132-33435178)
chr7 (229-287)||(38306282-38306340)
chr7 (229-287)||(1320815-1320874)
chr7 (229-284)||(3419658-3419713)
chr7 (229-284)||(3867140-3867195)
chr7 (228-278)||(23983225-23983275)
chr7 (229-287)||(37795010-37795068)
chr7 (248-286)||(44353585-44353623)
chr7 (1-73)||(9427891-9427964)
chr7 (177-286)||(26386125-26386234)
[»] chr2 (37 HSPs)
chr2 (172-287)||(22885078-22885193)
chr2 (172-287)||(33788577-33788692)
chr2 (140-287)||(10173490-10173638)
chr2 (132-287)||(16952287-16952443)
chr2 (132-287)||(17022952-17023108)
chr2 (132-287)||(17060258-17060414)
chr2 (196-287)||(16960003-16960094)
chr2 (172-287)||(27739996-27740111)
chr2 (132-287)||(34230222-34230377)
chr2 (196-279)||(2062918-2063001)
chr2 (161-279)||(25504842-25504961)
chr2 (161-287)||(4471944-4472069)
chr2 (132-286)||(7695985-7696138)
chr2 (161-287)||(15126344-15126470)
chr2 (139-277)||(18681096-18681234)
chr2 (141-287)||(1269504-1269651)
chr2 (172-279)||(31902359-31902466)
chr2 (161-286)||(3745356-3745482)
chr2 (196-287)||(17079190-17079282)
chr2 (140-284)||(915366-915509)
chr2 (172-287)||(27880076-27880189)
chr2 (229-287)||(14405219-14405277)
chr2 (9-76)||(1946002-1946069)
chr2 (161-240)||(43816390-43816469)
chr2 (229-287)||(39338867-39338925)
chr2 (230-287)||(13337295-13337352)
chr2 (12-69)||(22884934-22884991)
chr2 (171-279)||(29487159-29487268)
chr2 (229-285)||(7874314-7874370)
chr2 (13-56)||(15457214-15457257)
chr2 (172-287)||(37770587-37770701)
chr2 (38-72)||(20572308-20572342)
chr2 (2-71)||(27879925-27879995)
chr2 (12-66)||(43816257-43816311)
chr2 (1-70)||(13699075-13699144)
chr2 (191-256)||(20572127-20572192)
chr2 (239-287)||(5254277-5254325)
[»] chr5 (21 HSPs)
chr5 (161-287)||(39184119-39184247)
chr5 (1-279)||(17853843-17854119)
chr5 (131-287)||(7195144-7195299)
chr5 (161-279)||(8730946-8731065)
chr5 (203-287)||(31721698-31721782)
chr5 (161-284)||(24072201-24072323)
chr5 (172-278)||(22675269-22675375)
chr5 (196-287)||(27713090-27713181)
chr5 (228-279)||(39024451-39024502)
chr5 (141-278)||(8297498-8297635)
chr5 (229-287)||(13954236-13954294)
chr5 (172-284)||(14302375-14302487)
chr5 (170-287)||(33258825-33258942)
chr5 (12-70)||(39183986-39184044)
chr5 (141-286)||(7391950-7392090)
chr5 (230-286)||(26045967-26046023)
chr5 (248-287)||(34378119-34378158)
chr5 (167-287)||(21402777-21402897)
chr5 (229-284)||(18593267-18593322)
chr5 (229-286)||(23426366-23426423)
chr5 (181-287)||(25658105-25658213)
[»] chr8 (23 HSPs)
chr8 (161-287)||(15906707-15906834)
chr8 (161-284)||(17720640-17720762)
chr8 (199-285)||(30236099-30236186)
chr8 (132-285)||(17656907-17657060)
chr8 (204-284)||(32945680-32945760)
chr8 (172-287)||(35062478-35062593)
chr8 (232-286)||(10248558-10248612)
chr8 (159-285)||(41791196-41791322)
chr8 (229-287)||(24995397-24995455)
chr8 (229-287)||(31207364-31207422)
chr8 (231-287)||(10552289-10552345)
chr8 (239-287)||(16457473-16457521)
chr8 (229-287)||(9519520-9519578)
chr8 (8-78)||(17819587-17819655)
chr8 (229-287)||(36630858-36630916)
chr8 (216-283)||(3679471-3679538)
chr8 (248-286)||(20138448-20138486)
chr8 (229-287)||(34389007-34389065)
chr8 (239-281)||(41893412-41893454)
chr8 (134-179)||(25185357-25185402)
chr8 (248-284)||(15821400-15821436)
chr8 (239-283)||(37986870-37986914)
chr8 (239-287)||(40531253-40531301)
[»] chr1 (30 HSPs)
chr1 (140-287)||(4651801-4651947)
chr1 (172-287)||(27102212-27102327)
chr1 (162-287)||(19598657-19598782)
chr1 (162-287)||(17033607-17033734)
chr1 (161-284)||(50589141-50589264)
chr1 (229-287)||(5389423-5389481)
chr1 (132-218)||(16577351-16577437)
chr1 (161-287)||(38544671-38544798)
chr1 (229-287)||(31585762-31585820)
chr1 (229-287)||(41920473-41920531)
chr1 (161-286)||(42374185-42374311)
chr1 (229-287)||(46692821-46692879)
chr1 (173-286)||(27905434-27905542)
chr1 (1-73)||(38548848-38548920)
chr1 (229-287)||(30685906-30685964)
chr1 (12-70)||(42374386-42374444)
chr1 (247-284)||(9313309-9313346)
chr1 (229-278)||(10785461-10785510)
chr1 (178-287)||(27031789-27031900)
chr1 (239-287)||(5459182-5459230)
chr1 (239-287)||(46814479-46814527)
chr1 (140-286)||(6583129-6583275)
chr1 (238-284)||(15840923-15840969)
chr1 (229-283)||(24658954-24659008)
chr1 (229-283)||(32864563-32864617)
chr1 (1-79)||(49820347-49820424)
chr1 (242-279)||(46603421-46603458)
chr1 (11-55)||(2877923-2877967)
chr1 (229-285)||(9081508-9081563)
chr1 (230-278)||(16147585-16147633)
[»] chr6 (16 HSPs)
chr6 (137-287)||(20701713-20701863)
chr6 (159-287)||(26215951-26216079)
chr6 (172-284)||(9224065-9224178)
chr6 (172-287)||(26534660-26534779)
chr6 (199-287)||(21266134-21266222)
chr6 (146-287)||(32935258-32935399)
chr6 (161-284)||(33968549-33968670)
chr6 (229-286)||(13423488-13423545)
chr6 (203-279)||(21265015-21265091)
chr6 (229-287)||(3117514-3117572)
chr6 (11-88)||(5746819-5746895)
chr6 (206-285)||(13098550-13098629)
chr6 (181-287)||(15944040-15944147)
chr6 (253-287)||(34105434-34105468)
chr6 (238-283)||(32316393-32316438)
chr6 (232-280)||(12794143-12794191)
[»] chr4 (25 HSPs)
chr4 (172-286)||(35800511-35800625)
chr4 (140-283)||(53823333-53823477)
chr4 (161-287)||(38929848-38929974)
chr4 (178-279)||(12296204-12296305)
chr4 (140-284)||(41117880-41118024)
chr4 (172-278)||(28966897-28967003)
chr4 (132-273)||(19673135-19673276)
chr4 (132-286)||(19815125-19815283)
chr4 (229-285)||(25753195-25753251)
chr4 (229-287)||(16501752-16501810)
chr4 (208-279)||(46698765-46698837)
chr4 (232-287)||(22811165-22811220)
chr4 (196-286)||(21387173-21387263)
chr4 (172-287)||(38637178-38637292)
chr4 (231-287)||(49747548-49747604)
chr4 (12-79)||(20632268-20632335)
chr4 (9-67)||(23440203-23440262)
chr4 (161-259)||(21983755-21983853)
chr4 (196-287)||(24740071-24740163)
chr4 (132-283)||(48098358-48098509)
chr4 (44-79)||(12296389-12296424)
chr4 (228-287)||(30964462-30964521)
chr4 (239-285)||(4305748-4305794)
chr4 (239-285)||(30167576-30167622)
chr4 (229-287)||(39421015-39421073)
[»] scaffold0200 (1 HSPs)
scaffold0200 (175-287)||(19404-19516)
[»] scaffold0119 (1 HSPs)
scaffold0119 (141-287)||(42051-42198)
[»] scaffold1613 (1 HSPs)
scaffold1613 (161-287)||(950-1077)
[»] scaffold0499 (1 HSPs)
scaffold0499 (196-285)||(6581-6670)
[»] scaffold0063 (1 HSPs)
scaffold0063 (140-287)||(58148-58295)
[»] scaffold0050 (1 HSPs)
scaffold0050 (248-284)||(36731-36767)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 823208 - 823495
Alignment:
Q  1 caaaattaacttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataaccacccttcgcctttactcaccctaaaagaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  823208 caaaattaacttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataaccacccttcgcctctactcaccctaaaagaaac 823307  T
Q  101 acctctctatttcaagcaccttgtctttattaccatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacct 200  Q
    ||||||||| ||||| |||| |||| ||||||||||| |||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  823308 acctctctaattcaaacaccatgtccttattaccataattgagccacatctgaaaatgtcctattgaaaagatcattcagcttccgccacctctcaacct 823407  T
Q  201 ctggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||| ||||||||||||||||||| | |||||||| |||||||||  ||| ||||||| | |||||||||||||||||||||||||    
T  823408 ctggtctaccgaaagaacaccaaaataagcccaaaacaaaacttgaatgaaacaactgactctcgatctcgaatcaaaagtgatcggc 823495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 159 - 287
Target Start/End: Original strand, 1652818 - 1652946
Alignment:
Q  159 tcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactga 258  Q
    |||| ||| ||| |||||||| ||||||||||| ||||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||| |    
T  1652818 tccttttctaaagatcattcaacttccgccaccgcttaacctccggtccaccgaaagaacaccaaaaaagcccaaaaccaaacttgaaccaaagaactaa 1652917  T
Q  259 cgcccgatctcgaatcaaaagtgatcggc 287  Q
    | || ||||||||||||||||||||||||    
T  1652918 ctcctgatctcgaatcaaaagtgatcggc 1652946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 13018098 - 13018246
Alignment:
Q  1 caaaattaacttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataaccacccttcgcctttactcaccctaaaagaaac 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| | ||||| | |||  ||||||||||||||| |||    
T  13018098 caaaattaacttcaccacctaaaacagactccatcacaaaacaaccactaaaaaatgatatccatgatcacccattgccactactcaccctaaaag-aac 13018196  T
Q  101 acctctctatttcaagcaccttgtctttattaccatagttgagccacatc 150  Q
     ||  ||||  |||| |||| |||| | || |||||||||||||||||||    
T  13018197 gcccatctaaatcaaacaccctgtcctcatcaccatagttgagccacatc 13018246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 178 - 285
Target Start/End: Complemental strand, 5556701 - 5556593
Alignment:
Q  178 cagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaa-cttgaaccaaagaactgacgcccgatctcgaatcaa 276  Q
    |||| ||| |||||||| |||||| |||||||||||||||||||  ||   |||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  5556701 cagcctccaccacctctaaacctccggtccaccgaaagaacacctgaaaagcccaaaaccaaaacttgaaccaaagaactgactcccgatctcgaatcaa 5556602  T
Q  277 aagtgatcg 285  Q
    ||| |||||    
T  5556601 aagcgatcg 5556593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 287
Target Start/End: Complemental strand, 47945853 - 47945727
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacg 260  Q
    |||||||||| |||| | | ||||| |||||||  || ||| || ||||||||||||||||| ||   ||||||| ||||||||| ||||| |||||||     
T  47945853 ctattcaaaagatcaattaacttccaccacctcacaatctccggaccaccgaaagaacaccataaaagcccaaaatcaaacttgagccaaataactgact 47945754  T
Q  261 cccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||||||||||||||||||    
T  47945753 cccgatctcgaatcaaaagtgatcggc 47945727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 27399095 - 27398987
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaactgacgcccgatctcg 270  Q
    ||||||||||  || |||||||| ||||||||||||||| ||||||||||||||  | ||||||||||||||||||||||| ||||||| || || ||||    
T  27399095 atcattcagcaaccaccacctctcaacctctggtccaccaaaagaacaccaaaaaaagcccaaaaccaaacttgaaccaaataactgactcctgacctcg 27398996  T
Q  271 aatcaaaag 279  Q
    |||| ||||    
T  27398995 aatctaaag 27398987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 284
Target Start/End: Original strand, 30935303 - 30935447
Alignment:
Q  141 gagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaa-caccaaaatgacccaaaaccaa 239  Q
    |||||||||||||| |  |||| ||| ||| |||||||||||||| ||||| | ||| ||| ||||| | ||||||| ||||||||   | |||||||||    
T  30935303 gagccacatccgaagaactccttttctaaagatcattcagcttccaccaccgcgtaatctccggtccgctgaaagaaacaccaaaaaagctcaaaaccaa 30935402  T
Q  240 acttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    |||||||||||| |||| || |||||||| |||||||||| ||||    
T  30935403 acttgaaccaaataactaactcccgatcttgaatcaaaagcgatc 30935447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 285
Target Start/End: Original strand, 33143893 - 33144007
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacacca--aaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctc 269  Q
    |||| ||||||||| |||||||   ||||||| ||||||||||||| ||||  ||| | || ||||| || ||||| ||||||||||||| |||||||||    
T  33143893 atcaatcagcttccaccacctcgcgacctctgatccaccgaaagaa-accataaaaagcccaaaaactaatcttgatccaaagaactgactcccgatctc 33143991  T
Q  270 gaatcaaaagtgatcg 285  Q
    ||||||||||||||||    
T  33143992 gaatcaaaagtgatcg 33144007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 37123461 - 37123403
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||| |||| ||||||||||||| ||| |||||||||||||||||||||||    
T  37123461 cccaaaaccaaatttgatccaaagaactgactcccaatctcgaatcaaaagtgatcggc 37123403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 39021278 - 39021336
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  39021278 cccaaaaccagacttgatccaaagaactgactcccgacctcgaatcaaaagtgatcggc 39021336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 287
Target Start/End: Complemental strand, 14879603 - 14879456
Alignment:
Q  141 gagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacacca--aaatgacccaaaacca 238  Q
    ||||||||||||||||  ||||||   ||| |||||| ||||||| ||||||||  |||||   ||||||||||||| ||||  ||| | || ||| | |    
T  14879603 gagccacatccgaaaagctcctatctgaaagatcattaagcttccaccacctctcgacctcctatccaccgaaagaa-accataaaaagtccaaaaccaa 14879505  T
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| |||| |||| ||| |||||||||||||||||||||||||||    
T  14879504 aacttgatccaacgaacagactcccgatctcgaatcaaaagtgatcggc 14879456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 17551036 - 17550978
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| |||||||||||||||||||||||||||    
T  17551036 cccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 17550978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 19176581 - 19176523
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| |||||||||||||||||||||||||||    
T  19176581 cccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 19176523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 25647982 - 25647930
Alignment:
Q  12 tcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatcca 64  Q
    ||||||| ||||||| |||||||||| |||| |||||||||||||||||||||    
T  25647982 tcaccacataaaacatactccatcacgaaaccaccactgaaaaacgatatcca 25647930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 43012444 - 43012397
Alignment:
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||||    
T  43012444 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcgg 43012397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 14755283 - 14755325
Alignment:
Q  245 aaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  14755283 aaccaaagaactgactcccgatcttgaatcaaaagtgatcggc 14755325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 9584074 - 9584111
Alignment:
Q  248 caaagaactgacgcccgatctcgaatcaaaagtgatcg 285  Q
    |||||||||||| |||||||||||||||||||||||||    
T  9584074 caaagaactgactcccgatctcgaatcaaaagtgatcg 9584111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 14194010 - 14193962
Alignment:
Q  238 aaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    |||||||| ||||||||| ||| ||| ||||||||||||||||||||||    
T  14194010 aaacttgagccaaagaaccgactcccaatctcgaatcaaaagtgatcgg 14193962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 25594331 - 25594398
Alignment:
Q  12 tcaccacctaaaacaaactccatcacaaaacaaccactg-aaaaacgatatccataaccacccttcgcc 79  Q
    |||| |||||||||| ||||| ||||||||| ||||||| |||||||||||||| |||||||| |||||    
T  25594331 tcactacctaaaacatactccttcacaaaacgaccactgaaaaaacgatatcca-aaccacccatcgcc 25594398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 20611843 - 20611804
Alignment:
Q  248 caaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  20611843 caaagaactgactcccgatctcgaatcaaaaatgatcggc 20611804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 25594499 - 25594577
Alignment:
Q  206 ccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    |||| |||||||||||||||   |||||| |||| |||||||||||||| | ||  ||||||| |||||||||| ||||    
T  25594499 ccactgaaagaacaccaaaaaagcccaaagccaatcttgaaccaaagaattaacttccgatctagaatcaaaagcgatc 25594577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 33143733 - 33143787
Alignment:
Q  12 tcaccacctaaaacaaactccatcac-aaaacaaccactgaa-aaacgatatcca 64  Q
    ||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||||    
T  33143733 tcaccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatcca 33143787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 40023574 - 40023631
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    ||||||| | ||||| | ||||||||  ||| ||||||||||||||||||||||||||    
T  40023574 cccaaaaaccaacttaagccaaagaatcgactcccgatctcgaatcaaaagtgatcgg 40023631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 45398875 - 45398818
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    ||||||| | ||||| || |||||| ||||| | ||||||||||||||||||||||||    
T  45398875 cccaaaaaccaacttaaatcaaagagctgactctcgatctcgaatcaaaagtgatcgg 45398818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 14194229 - 14194177
Alignment:
Q  12 tcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatcca 64  Q
    ||||||||||||||| |||||||||| |||   |||||||| |||||||||||    
T  14194229 tcaccacctaaaacagactccatcacgaaatcgccactgaataacgatatcca 14194177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 30127319 - 30127283
Alignment:
Q  251 agaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  30127319 agaactgactcccgatctcgaatcaaaagcgatcggc 30127283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 40292819 - 40293025
Alignment:
Q  1 caaaattaacttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaa-cgatatccataaccacccttcgcctttactcaccctaaaagaaa 99  Q
    |||||||||||||| | ||||||||| ||| |||||||||||||||| ||||||| |||||||||||||||| | |||||| |||||||||||||||||     
T  40292819 caaaattaacttcatcgcctaaaacagacttcatcacaaaacaaccattgaaaaaacgatatccataaccactcatcgcctctactcaccctaaaagaa- 40292917  T
Q  100 cacctctctatttcaagcaccttgtctttattaccatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacc 199  Q
    ||||  | || ||||| ||||||||| | |||||||||| |||||| ||||||||| |||| |||| |||| || |||||||||||||||||||| |||     
T  40292918 cacccttataattcaaacaccttgtcctcattaccatagctgagccgcatccgaaattgtcttattgaaaagattattcagcttccgccacctctcaaca 40293017  T
Q  200 tctggtcc 207  Q
    || |||||    
T  40293018 tccggtcc 40293025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 161 - 287
Target Start/End: Complemental strand, 13311986 - 13311860
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacg 260  Q
    |||||| ||| |||| |||||| || |||||||| ||||||| ||||| ||||||||| ||||||   ||||| ||| |||||||||||||||||||||     
T  13311986 ctattctaaatatcaatcagctcccaccacctctcaacctctagtccatcgaaagaacgccaaaacagcccaacacctaacttgaaccaaagaactgact 13311887  T
Q  261 cccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||||||||||||||||||    
T  13311886 cccgatctcgaatcaaaagtgatcggc 13311860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 287
Target Start/End: Complemental strand, 3478488 - 3478373
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcga 271  Q
    |||||||||||||||||||||||  | ||| | ||||||||||||||||||| |   |||||||| || ||||| |||||||||| || |||||||||||    
T  3478488 atcattcagcttccgccacctctcgatctccgatccaccgaaagaacaccaacaaagcccaaaactaatcttgagccaaagaactaactcccgatctcga 3478389  T
Q  272 atcaaaagtgatcggc 287  Q
    ||||||||||||||||    
T  3478388 atcaaaagtgatcggc 3478373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 9428057 - 9428165
Alignment:
Q  179 agcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaa 278  Q
    ||||||| |||| ||  ||||||||||||||||||||||||||||||   ||||| |||||||| ||||| ||||||||||  | |||||||||||||||    
T  9428057 agcttccaccacttcacaacctctggtccaccgaaagaacaccaaaacagcccaagaccaaactagaaccgaagaactgacttctgatctcgaatcaaaa 9428156  T
Q  279 gtgatcggc 287  Q
    |||||||||    
T  9428157 gtgatcggc 9428165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 287
Target Start/End: Complemental strand, 8745321 - 8745174
Alignment:
Q  140 tgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaacca 238  Q
    |||||||||||||||||  ||||||   ||| ||||| |||||||| | ||||||  ||||| | ||||||||||||| |||| ||  | ||||||||||    
T  8745321 tgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctctcgacctccgatccaccgaaagaa-accataaaaagcccaaaacca 8745223  T
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| |||| |||||||  |||||||||||||||||||||||||||    
T  8745222 aacttgatccaacgaactgaatcccgatctcgaatcaaaagtgatcggc 8745174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 12480991 - 12480907
Alignment:
Q  204 gtccaccgaaagaacaccaaaatgacccaaaa-ccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||||||||| |||  | |||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  12480991 gtccaccgaaagaacacctaaaaaagccaaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaaagcgatcggc 12480907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 11379063 - 11379187
Alignment:
Q  162 tattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaa-cttgaaccaaagaactgacg 260  Q
    ||||| ||| |||| ||||| ||| |||||| | ||||||||||| |||  |||||||||||||   |||||||||||| |||||||||||| ||||||     
T  11379063 tattctaaagatcaatcagcctccaccacctataaacctctggtcaacc--aagaacaccaaaaaagcccaaaaccaaaacttgaaccaaagtactgact 11379160  T
Q  261 cccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||||||||||||||| |||||||    
T  11379161 cccgatctcgaatcaaaagcgatcggc 11379187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 46133221 - 46133338
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgaccc--aaaaccaaacttgaaccaaagaactgacgcccgatctc 269  Q
    |||| ||||||||| ||||| |  |||||| ||||||||||| |||||||||||  | ||  |||||||||||||||||| ||||||||| |||||||||    
T  46133221 atcaatcagcttcccccaccacgcaacctccggtccaccgaaggaacaccaaaaaaagcccaaaaaccaaacttgaaccagagaactgactcccgatctc 46133320  T
Q  270 gaatcaaaagtgatcggc 287  Q
     ||||||||| |||||||    
T  46133321 aaatcaaaagcgatcggc 46133338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 287
Target Start/End: Original strand, 6716677 - 6716796
Alignment:
Q  167 aaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacacca-aaatgacccaaaaccaaacttgaaccaaagaactgacgcccga 265  Q
    |||| |||| ||||||||| ||||||||  || || | ||||||||||||| |||| |||  |||||| ||||||||||| ||||||||||||| |||||    
T  6716677 aaaagatcaatcagcttccaccacctctcgacttc-gatccaccgaaagaa-accataaaaaacccaagaccaaacttgagccaaagaactgactcccga 6716774  T
Q  266 tctcgaatcaaaagtgatcggc 287  Q
    ||||||||||||||||||||||    
T  6716775 tctcgaatcaaaagtgatcggc 6716796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 287
Target Start/End: Complemental strand, 38485723 - 38485577
Alignment:
Q  140 tgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaa 239  Q
    ||||||||||| ||| |  ||||  || ||| |||||||||||||| |||||    |||||| |||||| |||| |||||||||||   |||||||||||    
T  38485723 tgagccacatctgaagaactccttctctaaagatcattcagcttccaccaccgtgcaacctccggtccatcgaaggaacaccaaaaaagcccaaaaccaa 38485624  T
Q  240 acttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||| |||||| |  |||||| |||||||||||||||||||||||||||    
T  38485623 actagaaccaga-tactgactcccgatctcgaatcaaaagtgatcggc 38485577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 36449383 - 36449113
Alignment:
Q  2 aaaattaacttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataaccacccttcgcctttactcaccctaaaagaaaca 101  Q
    ||||| ||| ||||||||||||| | ||| | |||| |||||||| |||||||||||||||||||||||| | ||| |  ||||||||  ||||||| ||    
T  36449383 aaaataaacatcaccacctaaaatagactacttcacgaaacaaccgctgaaaaacgatatccataaccactcatcgtcactactcaccacaaaagaa-ca 36449285  T
Q  102 cctctctatttcaagcaccttgtctttattaccatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctc 201  Q
    |      |  | || ||||  ||||| || |  |||| |||||||||| |||||| ||   |||  ||| ||||||  |||||| |||||||| ||||||    
T  36449284 c------acatgaaacaccaagtcttcatcaaaatagctgagccacattcgaaaaagttacattataaagatcattatgcttccaccacctctcaacctc 36449191  T
Q  202 tggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaa 278  Q
     | ||||||||||||| |||||||| |  |||||||  ||||||||||||||||||||| ||  ||||||||| ||||    
T  36449190 cgatccaccgaaagaaaaccaaaataagtccaaaacataacttgaaccaaagaactgactcctaatctcgaataaaaa 36449113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 140 - 287
Target Start/End: Original strand, 24324710 - 24324858
Alignment:
Q  140 tgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaacca 238  Q
    ||||||||| |||||||  |||||  | ||| |||||||||||||| ||||| ||  ||||| | |||||| |||||| |||| ||  | ||||||||||    
T  24324710 tgagccacagccgaaaagctcctaaccgaaagatcattcagcttccaccacccctcgacctccgatccacctaaagaa-accataaaaagcccaaaacca 24324808  T
Q  239 aa-cttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    || ||||| |||||||| |||| |||||||||||||||||| ||||||||    
T  24324809 aaacttgagccaaagaattgactcccgatctcgaatcaaaattgatcggc 24324858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 286
Target Start/End: Original strand, 47456956 - 47457081
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacg 260  Q
    |||||| ||| |||| | ||||||| |||||||  ||| || || ||||||||||||||||| ||   |||| ||| |||||||| |||||||||||||     
T  47456956 ctattctaaagatcaattagcttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaacttgagccaaagaactgact 47457055  T
Q  261 cccgatctcgaatcaaaagtgatcgg 286  Q
    ||| ||||| ||||||||| ||||||    
T  47457056 cccaatctcaaatcaaaagcgatcgg 47457081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 48058588 - 48058712
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacg 260  Q
    |||||| ||| |||| ||||||||| |||||||  ||||||  | |||||||||||||| || ||    |||||||||||||||| ||||| |||||||     
T  48058588 ctattctaaagatcaatcagcttccaccacctcacaacctccagaccaccgaaagaacaacataaaaggccaaaaccaaacttgagccaaaaaactgact 48058687  T
Q  261 cccgatctcgaatcaaaagtgatcg 285  Q
     |||||||| ||||||||| |||||    
T  48058688 tccgatctcaaatcaaaagcgatcg 48058712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 9349828 - 9349770
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| ||||||||||||  |||| |||| |||||||||||||||||||||||||||    
T  9349828 cccaaaatcaaacttgaacctgagaattgactcccgatctcgaatcaaaagtgatcggc 9349770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 22567912 - 22567970
Alignment:
Q  12 tcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataacca 70  Q
    ||||||||||||||| ||||  |||| ||||||||||||||||||| ||||||||||||    
T  22567912 tcaccacctaaaacagactctttcacgaaacaaccactgaaaaacggtatccataacca 22567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 10244260 - 10244203
Alignment:
Q  230 ccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||| | |||||||  |||||||||||| |||||||||||||||||||||||||||    
T  10244260 ccaaaaactaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 10244203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 279
Target Start/End: Original strand, 22568045 - 22568164
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaa-cttgaaccaaagaactgac 259  Q
    |||||| ||| |||| |||| || | |||||||| |||||  ||||| ||||||||||||| |||  | |||||| |||| ||||||||||| |||| ||    
T  22568045 ctattctaaagatcaatcagttttcaccacctctcaaccttcggtccgccgaaagaacacctaaaaaatccaaaatcaaaacttgaaccaaaaaactaac 22568144  T
Q  260 gcccgatctcgaatcaaaag 279  Q
     ||||||| |||||||||||    
T  22568145 tcccgatcacgaatcaaaag 22568164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 287
Target Start/End: Complemental strand, 34390135 - 34389983
Alignment:
Q  137 agttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga---cccaa 233  Q
    |||||||||||||  |||||  ||||| || ||  | ||| |||||||| | ||||||  ||||| | |||||||||||| ||| ||||| |   |||||    
T  34390135 agttgagccacatttgaaaagctcctaatcgaatgaacatgcagcttccacaacctctcgacctccgatccaccgaaagagcac-aaaataaaagcccaa 34390037  T
Q  234 aaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    || | ||||| | ||||||| ||||| |||||||||||||||||||||||||||    
T  34390036 aaaccaacttaagccaaagagctgactcccgatctcgaatcaaaagtgatcggc 34389983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 42533223 - 42533309
Alignment:
Q  197 acctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    ||||||| ||||||||||||| |||| ||  | || ||||||||||| | |||||| | |||| ||||||||||||||||||||||||    
T  42533223 acctctgatccaccgaaagaa-accataaaaagcccaaaccaaacttaagccaaaggattgactcccgatctcgaatcaaaagtgatc 42533309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 6584988 - 6584930
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | ||||| | ||||||| ||||| |||||||||||||||||||||||||||    
T  6584988 cccaaaaaccaacttaagccaaagagctgactcccgatctcgaatcaaaagtgatcggc 6584930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 23983502 - 23983416
Alignment:
Q  13 caccacctaaaacaaactccatcac-aaaacaaccactgaaaaacgatatccataaccacccttcgcctttactcaccctaaaagaa 98  Q
    |||||||||||||| ||||  |||| |||||||||||||||||||||||| |||||| |||| ||  |  ||||||||| |||||||    
T  23983502 caccacctaaaacagactcattcacgaaaacaaccactgaaaaacgatatacataactacccatcatcactactcaccccaaaagaa 23983416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 33435178 - 33435132
Alignment:
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcg 285  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||    
T  33435178 aacttgagacaaagaactgactcccgatctcgaatcaaaagtgatcg 33435132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 38306340 - 38306282
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| ||| |||||||||||||||||||||||    
T  38306340 cccaaaaaccaacttgagtcaaagaactgactcccaatctcgaatcaaaagtgatcggc 38306282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 1320874 - 1320815
Alignment:
Q  229 cccaaaaccaaa-cttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||| ||||| |||||||||||||  ||||| | ||||||||||||||||||    
T  1320874 cccaaaaccaaaacttgagccaaagaactgacttccgattttgaatcaaaagtgatcggc 1320815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 3419658 - 3419713
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    ||||||| | |||||||  |||||| ||||| ||||||||||||||||||||||||    
T  3419658 cccaaaaaccaacttgagtcaaagagctgactcccgatctcgaatcaaaagtgatc 3419713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 3867195 - 3867140
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    ||||||| | |||||||  |||||||||||| |||| |||||||||||||||||||    
T  3867195 cccaaaaaccaacttgagtcaaagaactgactcccggtctcgaatcaaaagtgatc 3867140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 23983275 - 23983225
Alignment:
Q  228 acccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaa 278  Q
    |||||||||||||||||| | || ||| |||| ||||||||||||||||||    
T  23983275 acccaaaaccaaacttgagctaaggaattgactcccgatctcgaatcaaaa 23983225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 37795068 - 37795010
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| |||||||||||||||||| ||| ||||    
T  37795068 cccaaaaaccaacttgactcaaagaactgactcccgatctcgaatcaaaactgaacggc 37795010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 44353585 - 44353623
Alignment:
Q  248 caaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  44353585 caaagaactgactcccgatctcaaatcaaaagtgatcgg 44353623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9427891 - 9427964
Alignment:
Q  1 caaaattaacttcaccacctaaaacaaactccatcacaaa-acaaccactgaaaaacgatatccataaccaccc 73  Q
    |||||| ||| |||| |||||||||||| ||  |||| || ||||||||| ||||| |||||||||||||||||    
T  9427891 caaaataaacatcactacctaaaacaaattctttcacgaagacaaccactaaaaaatgatatccataaccaccc 9427964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 286
Target Start/End: Original strand, 26386125 - 26386234
Alignment:
Q  177 tcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaa 276  Q
    |||| |||| |||||||| | | || |||||| ||||||||||||||| |  || ||| | |||||||||   ||||||  || ||||||||||||||||    
T  26386125 tcagtttccaccacctctcatcatccggtccatcgaaagaacaccaaattagcctaaatcaaaacttgaattgaagaacgaactcccgatctcgaatcaa 26386224  T
Q  277 aagtgatcgg 286  Q
    ||| ||||||    
T  26386225 aagcgatcgg 26386234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 22885078 - 22885193
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcga 271  Q
    |||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  22885078 atcaatcaacttccaccacctctcaacctctggtccaccgaaagaacaccaaaacaacccaaaaccaaacttgaaccaaagaactgactcccgatctcga 22885177  T
Q  272 atcaaaagtgatcggc 287  Q
    ||||||||||||||||    
T  22885178 atcaaaagtgatcggc 22885193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 33788577 - 33788692
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcga 271  Q
    |||| ||||||||| |||||||| |||||||||| |||||||||||||||||||  ||||||| |||||| ||||||||||||||||| ||| |||||||    
T  33788577 atcaatcagcttccaccacctctcaacctctggttcaccgaaagaacaccaaaacaacccaaagccaaacctgaaccaaagaactgactcccaatctcga 33788676  T
Q  272 atcaaaagtgatcggc 287  Q
    |||||||| |||||||    
T  33788677 atcaaaagcgatcggc 33788692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 287
Target Start/End: Original strand, 10173490 - 10173638
Alignment:
Q  140 tgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaa-aatgacccaaaacca 238  Q
    |||||||||||||||||  || ||||||||| |||||||| ||||| ||||||||  ||||| | | ||||||||||||||||| ||   ||||||||||    
T  10173490 tgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctctcgacctccgattcaccgaaagaacaccaacaaaagcccaaaacca 10173589  T
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| ||||| |||| ||  ||||||||||||||||||||||||||    
T  10173590 aacttgagccaaataacttacttccgatctcgaatcaaaagtgatcggc 10173638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 287
Target Start/End: Original strand, 16952287 - 16952443
Alignment:
Q  132 accatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacacc--aaaatgac 229  Q
    |||| |||||| |||||||||||||  |||||| | ||| ||| || ||||||| |||||||| |||||| | |||||||||||||||||  ||||||      
T  16952287 accaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatg-t 16952385  T
Q  230 ccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||||  |||||||    
T  16952386 ccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaaaagatcggc 16952443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 287
Target Start/End: Original strand, 17022952 - 17023108
Alignment:
Q  132 accatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacacc--aaaatgac 229  Q
    |||| |||||| |||||||||||||  |||||| | ||| ||| || ||||||| |||||||| |||||| | |||||||||||||||||  ||||||      
T  17022952 accaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatg-t 17023050  T
Q  230 ccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||||  |||||||    
T  17023051 ccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaaaagatcggc 17023108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 287
Target Start/End: Original strand, 17060258 - 17060414
Alignment:
Q  132 accatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacacc--aaaatgac 229  Q
    |||| |||||| |||||||||||||  |||||| | ||| ||| || ||||||| |||||||| |||||| | |||||||||||||||||  ||||||      
T  17060258 accaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatg-t 17060356  T
Q  230 ccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||||  |||||||    
T  17060357 ccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaaaagatcggc 17060414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 16960094 - 16960003
Alignment:
Q  196 aacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||||||| | ||||||||||||||||| |||||||    
T  16960094 aacctctggtccaccgaaagaacaccaaataagcccaaaaccaaacttgagccaaagaactgactctcgatctcgaatcaaaagcgatcggc 16960003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 287
Target Start/End: Complemental strand, 27740111 - 27739996
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcga 271  Q
    |||| |||| |||| |||||||| ||||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  |||||| | |||||| ||    
T  27740111 atcaatcagtttccaccacctctcaacctctggtccaccgaaagaacaccaaaacaacccaagaccaaacttgaaccgaaacactgactctcgatcttga 27740012  T
Q  272 atcaaaagtgatcggc 287  Q
    |||||||| |||||||    
T  27740011 atcaaaagcgatcggc 27739996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 132 - 287
Target Start/End: Complemental strand, 34230377 - 34230222
Alignment:
Q  132 accatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacac-caaaatgacc 230  Q
    |||| |||||||||||||| |||||  || ||||  ||| |||||||||||||| |||||||| |||||| | |||||||||||||  | ||||| | ||    
T  34230377 accaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctctcaacctccgatccaccgaaagaaaccacaaaaag-cc 34230279  T
Q  231 caaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||| ||||||||| ||||||||||||| || |||||||||| |||| ||||||||    
T  34230278 caaaatcaaacttgatccaaagaactgactcctgatctcgaataaaaaatgatcggc 34230222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 2063001 - 2062918
Alignment:
Q  196 aacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaag 279  Q
    |||||||||| |||||||||||||||||||   ||||||||||||||||| ||||||| ||||| |||||||||||||||||||    
T  2063001 aacctctggtacaccgaaagaacaccaaaaaagcccaaaaccaaacttgagccaaagagctgactcccgatctcgaatcaaaag 2062918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 279
Target Start/End: Original strand, 25504842 - 25504961
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaacc-aaacttgaaccaaagaactgac 259  Q
    |||||| ||| |||| | ||||||| |||||||| |||||  |||||| ||||||||||||||||   ||||||||| |||| |||||||||||||||||    
T  25504842 ctattctaaatatcaattagcttccaccacctctgaaccttcggtccatcgaaagaacaccaaaaaagcccaaaaccaaaacctgaaccaaagaactgac 25504941  T
Q  260 gcccgatctcgaatcaaaag 279  Q
     ||||||||||||| |||||    
T  25504942 tcccgatctcgaattaaaag 25504961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 287
Target Start/End: Complemental strand, 4472069 - 4471944
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacg 260  Q
    |||||| ||| |||| ||||||||  |||||| || ||||| |||||||| |||||||||||| |   ||||||| |||||||||| ||||||||||||     
T  4472069 ctattctaaagatcaatcagcttctaccacct-ttgacctccggtccaccaaaagaacaccaataaagcccaaaaacaaacttgaatcaaagaactgact 4471971  T
Q  261 cccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||||||||||||| | |||||||    
T  4471970 cccgatctcgaatcaaaggcgatcggc 4471944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 286
Target Start/End: Complemental strand, 7696138 - 7695985
Alignment:
Q  132 accatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgaccc 231  Q
    |||| |||||||||||||||  |||| |||||| | ||| |||||||||||||| |||||||   ||||  | |||||||||||||  |  ||| | |||    
T  7696138 accaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctcccgaccttcgatccaccgaaagaaaccgtaaaag-ccc 7696040  T
Q  232 aaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    |||||| ||||||| ||||||||||||| |||| | |||||||||||||||||||    
T  7696039 aaaacctaacttgagccaaagaactgactcccggtatcgaatcaaaagtgatcgg 7695985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 287
Target Start/End: Original strand, 15126344 - 15126470
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacg 260  Q
    |||||| ||| |||| | || |||| |||||||  |||||| || ||||||||||||||||| ||   ||||||||||||| ||| ||||||||| |||     
T  15126344 ctattctaaagatcaataagtttccaccacctcacaacctccggaccaccgaaagaacaccataaaagcccaaaaccaaacatgagccaaagaaccgact 15126443  T
Q  261 cccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||||||||| ||||||||    
T  15126444 cccgatctcgaatcaaaaatgatcggc 15126470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 277
Target Start/End: Complemental strand, 18681234 - 18681096
Alignment:
Q  139 ttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaacca 238  Q
    |||||||||||||||| |  ||||  || ||| |||||||||||| | |||||    |||||||| |||||| || |||||||| ||   ||||||||||    
T  18681234 ttgagccacatccgaagagctccttctctaaagatcattcagctttcaccaccgtgcaacctctgatccaccaaaggaacaccacaaaagcccaaaacca 18681135  T
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaa 277  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  18681134 aacttgaaccagagaactgactcccgatctcgaatcaaa 18681096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 287
Target Start/End: Complemental strand, 1269651 - 1269504
Alignment:
Q  141 gagccacatccgaaaatgtcctattcaaaaa-atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaacca 238  Q
    ||||||||| ||||||  |||||| | |||| || ||||||||||| ||| ||||  ||||| | ||||| ||||||| |||| ||  | ||||||||||    
T  1269651 gagccacattcgaaaagctcctatccgaaaagattattcagcttccaccaactctcgacctccgatccactgaaagaa-accataaaaatcccaaaacca 1269553  T
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  1269552 aacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggc 1269504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 279
Target Start/End: Original strand, 31902359 - 31902466
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcga 271  Q
    |||||||||||||| ||||| |  |||||| |||||||| || ||||| ||||    | ||||||||||||||||||| ||||||||| |||||||||||    
T  31902359 atcattcagcttcccccaccacgcaacctccggtccaccaaaggaacatcaaataagctcaaaaccaaacttgaaccagagaactgactcccgatctcga 31902458  T
Q  272 atcaaaag 279  Q
    || |||||    
T  31902459 attaaaag 31902466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 286
Target Start/End: Complemental strand, 3745482 - 3745356
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaa-cttgaaccaaagaactgac 259  Q
    |||||| ||| |||| ||||| ||| |||| | | |||||||| ||||||||||||||| |||||   ||||||| |||| ||| |||||||||||||||    
T  3745482 ctattctaaagatcaatcagcctccaccacttttaaacctctgatccaccgaaagaacaacaaaaaagcccaaaaacaaaacttaaaccaaagaactgac 3745383  T
Q  260 gcccgatctcgaatcaaaagtgatcgg 286  Q
      |||||||||||| ||||| ||||||    
T  3745382 ttccgatctcgaattaaaagcgatcgg 3745356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 17079282 - 17079190
Alignment:
Q  196 aacctctggtccaccgaaagaacaccaaaa--tgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||| | |||||||||||||||||||||  || || |||||||||||||| ||||||||||| | ||||||||||||||||||  |||||||    
T  17079282 aacctccgatccaccgaaagaacaccaaaaaatgtcc-aaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaaaagatcggc 17079190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 284
Target Start/End: Original strand, 915366 - 915509
Alignment:
Q  140 tgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaa 239  Q
    ||||| ||||||||| |  |||| |||  ||||||||| ||||||| ||||| |  |||||| ||| ||||||||||| || |||| |  ||||||||||    
T  915366 tgagcaacatccgaagaactccttttcttaaaatcattgagcttccaccaccgcgcaacctccggtgcaccgaaagaatactaaaaagctccaaaaccaa 915465  T
Q  240 acttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    ||||||| |||| |||||||   ||||||||||||||||| ||||    
T  915466 acttgaatcaaa-aactgactttcgatctcgaatcaaaagcgatc 915509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 27880076 - 27880189
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcga 271  Q
    |||| ||||||| | |||||||| | |||| |||| |||||||||||| |||||   |||||| |||||||||||||||| |||||||  ||||||||||    
T  27880076 atcaatcagctttcaccacctctcatcctccggtc-accgaaagaacaacaaaacagcccaaa-ccaaacttgaaccaaataactgacttccgatctcga 27880173  T
Q  272 atcaaaagtgatcggc 287  Q
    |||||||  |||||||    
T  27880174 atcaaaatcgatcggc 27880189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 14405277 - 14405219
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | ||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  14405277 cccaaaaaccaacttgagccaaagagctgactcccgatctcgaatcaaaagtgatcggc 14405219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 1946069 - 1946002
Alignment:
Q  9 acttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataaccacccttc 76  Q
    ||||||||||||||| |||||||||||| |||||  ||||| |||||||| |||||||| | ||||||    
T  1946069 acttcaccacctaaatcaaactccatcataaaacggccactaaaaaacgaaatccataaacccccttc 1946002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 43816390 - 43816469
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaa 240  Q
    |||||| ||| |||| ||||| ||| |||||| | |||||||||||||||||||||| |||||||   ||||||||||||    
T  43816390 ctattctaaagatcaatcagcctccaccacctttaaacctctggtccaccgaaagaataccaaaaaagcccaaaaccaaa 43816469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 39338867 - 39338925
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| ||||||||||||||||||| |||||||    
T  39338867 cccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagcgatcggc 39338925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 13337352 - 13337295
Alignment:
Q  230 ccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||| |||||||  ||||||||||||  ||||| ||||||||||||||||||||    
T  13337352 ccaaaacctaacttgagtcaaagaactgacttccgatttcgaatcaaaagtgatcggc 13337295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 22884934 - 22884991
Alignment:
Q  12 tcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataacc 69  Q
    ||||||||||||||| ||||| |||| |||| |||||||| |||||| ||||||||||    
T  22884934 tcaccacctaaaacagactccttcacgaaacgaccactgacaaacgaaatccataacc 22884991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 29487268 - 29487159
Alignment:
Q  171 aatcattcagcttccgccacctcttaacctctggtccaccgaaagaacacca-aaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctc 269  Q
    ||||| ||||||||| ||||| |  ||||||||||| |||||||||||| || ||  | || |||||||||| |||||| ||||||||||   | |||||    
T  29487268 aatcaatcagcttccaccaccacacaacctctggtcaaccgaaagaacatcataacagcccaaaaaccaaacatgaaccgaagaactgactatcaatctc 29487169  T
Q  270 gaatcaaaag 279  Q
    ||||||||||    
T  29487168 gaatcaaaag 29487159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 7874370 - 7874314
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcg 285  Q
    ||||||| | |||||||  |||||| ||||| |||||||||||||||||||||||||    
T  7874370 cccaaaaaccaacttgagtcaaagagctgactcccgatctcgaatcaaaagtgatcg 7874314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 15457257 - 15457214
Alignment:
Q  13 caccacctaaaacaaactccatcacaaaacaaccactgaaaaac 56  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||    
T  15457257 caccacctaaaacaaattccttcacgaaacaaccactgaaaaac 15457214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 37770587 - 37770701
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcga 271  Q
    ||||||||||||||  |||||||  ||||| | | ||||||||||| |||| ||   |||||||||||| |||| | |||||| |||| || ||||  ||    
T  37770587 atcattcagcttccaacacctctcgacctccgattcaccgaaagaa-accataaaagcccaaaaccaaaattgatctaaagaattgactcctgatccaga 37770685  T
Q  272 atcaaaagtgatcggc 287  Q
    ||||||||||||||||    
T  37770686 atcaaaagtgatcggc 37770701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 20572342 - 20572308
Alignment:
Q  38 aaaacaaccactgaaaaacgatatccataaccacc 72  Q
    ||||| |||||||||||||||||||||||||||||    
T  20572342 aaaacgaccactgaaaaacgatatccataaccacc 20572308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 27879925 - 27879995
Alignment:
Q  2 aaaattaacttcaccacctaaaacaaactccatcac-aaaacaaccactgaaaaacgatatccataaccac 71  Q
    ||||| ||| ||||||||||||||| ||||| |||  ||||| ||| ||||||||||| ||||||||||||    
T  27879925 aaaataaacatcaccacctaaaacagactccttcaggaaaacgacctctgaaaaacgaaatccataaccac 27879995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 43816257 - 43816311
Alignment:
Q  12 tcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccata 66  Q
    ||||||||||||| | ||||  |||| ||||||||||||||||||| ||||||||    
T  43816257 tcaccacctaaaatagactctttcacgaaacaaccactgaaaaacggtatccata 43816311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13699075 - 13699144
Alignment:
Q  1 caaaattaacttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataacca 70  Q
    |||||| ||| ||||||||||||||| ||||  | || |||| |||||||||||||| ||| ||||||||    
T  13699075 caaaataaacatcaccacctaaaacacactcttttacgaaacgaccactgaaaaacggtatacataacca 13699144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 20572192 - 20572127
Alignment:
Q  191 ctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaact 256  Q
    |||| ||| |||| |||||||||||||||||||||  |||||||| ||||||| |  |||||||||    
T  20572192 ctctcaacttctgatccaccgaaagaacaccaaaaaaacccaaaatcaaacttaagtcaaagaact 20572127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 5254325 - 5254277
Alignment:
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||||||||||| | ||| ||||||||| ||| |||||||||||||    
T  5254325 aacttgaaccaaagagcagactcccgatctcaaattaaaagtgatcggc 5254277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 287
Target Start/End: Original strand, 39184119 - 39184247
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaa--cttgaaccaaagaactga 258  Q
    |||||||||| |||| ||||||||| | |||||  ||||||||||||||||||||||||||||||   | ||||||||||  ||||||||||||||||||    
T  39184119 ctattcaaaagatcaatcagcttccactacctcacaacctctggtccaccgaaagaacaccaaaaaagctcaaaaccaaatgcttgaaccaaagaactga 39184218  T
Q  259 cgcccgatctcgaatcaaaagtgatcggc 287  Q
    |  ||||||||||||||||||||||||||    
T  39184219 cttccgatctcgaatcaaaagtgatcggc 39184247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 17853843 - 17854119
Alignment:
Q  1 caaaattaacttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataaccacccttcgcctttactcaccctaaaagaa-a 99  Q
    |||||| ||| |||||  |||||||| ||||| | || |||| | |||||||||||||||||||||||||||| || ||  ||||||||| ||||| | |    
T  17853843 caaaataaacatcaccttctaaaacagactcctttacgaaacgatcactgaaaaacgatatccataaccacccatcaccactactcaccccaaaagtaga 17853942  T
Q  100 cacctctctatttcaagcaccttgtctttattaccatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacc 199  Q
    |||||||  ||   || ||||   || | || ||||||| ||||||||||||||||| ||| ||||| ||| |||||||| ||||| |||||||| |||     
T  17853943 cacctctaaatg--aaacaccaa-tcctcatcaccatagctgagccacatccgaaaa-gtcatattctaaagatcattcaacttccaccacctctcaact 17854038  T
Q  200 tctggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaag 279  Q
    || |||||||||||||||||  ||||| | ||||||    ||||||||||||| || |||| ||||||||||| |||||||    
T  17854039 tcaggtccaccgaaagaacattaaaataagcccaaagtagaacttgaaccaaataattgactcccgatctcgagtcaaaag 17854119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 287
Target Start/End: Original strand, 7195144 - 7195299
Alignment:
Q  131 taccatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacc 230  Q
    ||||| || ||||||||||||| |||  |||||| ||||| || ||||||||||| | ||||||  ||||| | |||||||||| || |||| ||   ||    
T  7195144 taccaaagctgagccacatccgcaaagctcctatccaaaagattattcagcttccacgacctctcgacctccgatccaccgaaaaaa-accataaaagcc 7195242  T
Q  231 caaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||  | ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  7195243 caaactctaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcggc 7195299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 279
Target Start/End: Complemental strand, 8731065 - 8730946
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaacc-aaacttgaaccaaagaactgac 259  Q
    |||||| ||| |||| | ||||||| |||||||| |||||  |||||| ||||||||||||||||   ||||||||| |||| |||||||||||||||||    
T  8731065 ctattctaaatatcaattagcttccaccacctctgaaccttcggtccatcgaaagaacaccaaaaaagcccaaaaccaaaacctgaaccaaagaactgac 8730966  T
Q  260 gcccgatctcgaatcaaaag 279  Q
     ||||||||||||| |||||    
T  8730965 tcccgatctcgaattaaaag 8730946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 31721782 - 31721698
Alignment:
Q  203 ggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| ||| |||||||||||  |||||||||||||  ||||||| ||||||||| ||||||||||||||||||| |||||||    
T  31721782 ggtccactgaaggaacaccaaaacaacccaaaaccaaaaatgaaccagagaactgactcccgatctcgaatcaaaagcgatcggc 31721698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 284
Target Start/End: Original strand, 24072201 - 24072323
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacg 260  Q
    |||||| ||| | |||||||| ||  |||||| | |||||| |||||||||||||||||||||||  |||| ||| ||| |||||||||||||||||||     
T  24072201 ctattctaaagaccattcagcatcaaccacctttcaacctccggtccaccgaaagaacaccaaaaaaaccccaaatcaa-cttgaaccaaagaactgact 24072299  T
Q  261 cccgatctcgaatcaaaagtgatc 284  Q
     |||||||| ||||||||| ||||    
T  24072300 tccgatctcaaatcaaaagcgatc 24072323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 22675269 - 22675375
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcga 271  Q
    |||| ||| ||||| |||||||  |||||| || |||| ||||||||||||  |   ||||||||||||||||| ||||||||||||| |||||||||||    
T  22675269 atcaatcaacttccaccacctcacaacctccggaccactgaaagaacaccattaaagcccaaaaccaaacttgagccaaagaactgactcccgatctcga 22675368  T
Q  272 atcaaaa 278  Q
    |||||||    
T  22675369 atcaaaa 22675375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 27713181 - 27713090
Alignment:
Q  196 aacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||||||||| || ||   ||||||||||||||||| ||||||||||||  ||||||||||||||||||  |||||||    
T  27713181 aacctctagaccaccgaaagaacaacataaaagcccaaaaccaaacttgagccaaagaactgattcccgatctcgaatcaaaaacgatcggc 27713090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 39024451 - 39024502
Alignment:
Q  228 acccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaag 279  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  39024451 acccaaaaccaaacttgaaccaaagaagtgactcccgatctcgaatcaaaag 39024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 278
Target Start/End: Complemental strand, 8297635 - 8297498
Alignment:
Q  141 gagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgac-ccaaaaccaa 239  Q
    ||||||||||||||||  |||||| | ||| | |||||| ||||| |||||||   ||||| | | ||||||||||| |||| ||  |  ||||||||||    
T  8297635 gagccacatccgaaaagctcctatccgaaagaccattcaacttccaccacctcacgacctccgattcaccgaaagaa-accataaaaagtccaaaaccaa 8297537  T
Q  240 acttgaaccaaagaactgacgcccgatctcgaatcaaaa 278  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  8297536 acttgagccaaagaactgactcccgatctcgaatcaaaa 8297498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 13954236 - 13954294
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||||||||||||| |||||| | |||| |||||||||||||||||||||||||||    
T  13954236 cccaaaaccaaacttgagccaaagtaatgactcccgatctcgaatcaaaagtgatcggc 13954294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 284
Target Start/End: Original strand, 14302375 - 14302487
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaactgacgcccgatctcg 270  Q
    ||||| |||||||| ||||||||  ||||| | ||||||||||||| |||| ||  | ||||||||||||||||  ||||||||||||| ||| ||||||    
T  14302375 atcatgcagcttccaccacctctcgacctccgatccaccgaaagaa-accataaaaagcccaaaaccaaacttgctccaaagaactgactcccaatctcg 14302473  T
Q  271 aatcaaaagtgatc 284  Q
    || |||||||||||    
T  14302474 aaccaaaagtgatc 14302487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 33258825 - 33258942
Alignment:
Q  170 aaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaactgacgcccgatct 268  Q
    |||||||||||||||| | | ||||  ||||| | ||||||||||||| |||| ||  | |||||| |||| || ||||||||||||| || || |||||    
T  33258825 aaatcattcagcttccactatctctcgacctccgatccaccgaaagaa-accataaaaagcccaaatccaacctcgaaccaaagaactaactcctgatct 33258923  T
Q  269 cgaatcaaaagtgatcggc 287  Q
    |||||||||||||||||||    
T  33258924 cgaatcaaaagtgatcggc 33258942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 39183986 - 39184044
Alignment:
Q  12 tcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataacca 70  Q
    ||||||||||||||| |||| ||||| |||| |||||||||||||| ||||||||||||    
T  39183986 tcaccacctaaaacagactctatcacgaaacgaccactgaaaaacggtatccataacca 39184044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 286
Target Start/End: Original strand, 7391950 - 7392090
Alignment:
Q  141 gagccacatccgaaaatgtcctattcaaaaa-atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaa 239  Q
    ||||||||||||||||  |||||| ||| || |||| || |||||  ||||||||  ||||| | ||||||||||||| |||| ||   |||||||||||    
T  7391950 gagccacatccgaaaagctcctatccaataagatcaatccgcttcaaccacctctcgacctccgatccaccgaaagaa-accataaaagcccaaaaccaa 7392048  T
Q  240 acttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
       ||  ||||||||||||| ||||||||||||||||||||||||||    
T  7392049 ---tg--ccaaagaactgactcccgatctcgaatcaaaagtgatcgg 7392090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 26045967 - 26046023
Alignment:
Q  230 ccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    |||||||||||||||| |||||  ||| || ||||||||||||||||||||||||||    
T  26045967 ccaaaaccaaacttgagccaaaacactaactcccgatctcgaatcaaaagtgatcgg 26046023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 34378158 - 34378119
Alignment:
Q  248 caaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  34378158 caaagaactgactcccgatctcgaatcaaaagtgatcggc 34378119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 287
Target Start/End: Original strand, 21402777 - 21402897
Alignment:
Q  167 aaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacc-caaaaccaaacttgaaccaaagaactgacgcccga 265  Q
    |||| |||| ||| ||||| |||||||| ||||||   ||||||||||||| |||| ||  | | ||||||||||| |||  |||||||||||| |||||    
T  21402777 aaaagatcaatcaacttccaccacctctcaacctccaatccaccgaaagaa-accataaaaagctcaaaaccaaacctgagtcaaagaactgactcccga 21402875  T
Q  266 tctcgaatcaaaagtgatcggc 287  Q
    |||||||  |||||||||||||    
T  21402876 tctcgaactaaaagtgatcggc 21402897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 18593322 - 18593267
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    ||||||| | |||||||  ||||||||| || ||||||||||||||||||||||||    
T  18593322 cccaaaaaccaacttgagtcaaagaactaactcccgatctcgaatcaaaagtgatc 18593267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 23426423 - 23426366
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    |||||||||||| ||||  | |||||||||| ||| ||||||||||||||||| ||||    
T  23426423 cccaaaaccaaaattgattcgaagaactgactcccaatctcgaatcaaaagtgttcgg 23426366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 25658105 - 25658213
Alignment:
Q  181 cttccgccacctcttaacctctggtccaccgaaagaacacca-aaatgacccaaaaccaaa-cttgaaccaaagaactgacgcccgatctcgaatcaaaa 278  Q
    |||||||||||| | | |||| | | |||||||||||||||| ||||  |||||||| ||| ||||||  ||||||||||| |||  ||| |||||||||    
T  25658105 cttccgccacctatcaccctccgtttcaccgaaagaacaccataaatagcccaaaacaaaaacttgaattaaagaactgactcccagtctagaatcaaaa 25658204  T
Q  279 gtgatcggc 287  Q
    | |||||||    
T  25658205 gcgatcggc 25658213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 287
Target Start/End: Complemental strand, 15906834 - 15906707
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaactgac 259  Q
    |||||| | |||||| ||| ||||| ||||||||||||||||||||||| |||||||   | |||| | |||||||||||||||||||||||||||||||    
T  15906834 ctattctataaatcaatcatcttccaccacctcttaacctctggtccactgaaagaaacactaaatcagcccaaaaccaaacttgaaccaaagaactgac 15906735  T
Q  260 gcccgatctcgaatcaaaagtgatcggc 287  Q
     ||||||||||||||||| |||||||||    
T  15906734 tcccgatctcgaatcaaatgtgatcggc 15906707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 284
Target Start/End: Original strand, 17720640 - 17720762
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacg 260  Q
    |||||| ||| |||| ||| ||||| |||||||| ||||||  ||||||||||||||||||||||   ||||||||| || ||||||||||||||||||     
T  17720640 ctattctaaagatcaatcaacttccaccacctctcaacctcaagtccaccgaaagaacaccaaaacagcccaaaacctaaattgaaccaaagaactgact 17720739  T
Q  261 cccgatctcgaatcaaaagtgatc 284  Q
    ||||||| ||||||||||| ||||    
T  17720740 cccgatc-cgaatcaaaagcgatc 17720762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 30236099 - 30236186
Alignment:
Q  199 ctctggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcg 285  Q
    |||||||||||||| | ||||||||||  | ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  30236099 ctctggtccaccgatacaacaccaaaaaaagcccaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaaagcgatcg 30236186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 285
Target Start/End: Original strand, 17656907 - 17657060
Alignment:
Q  132 accatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgac-c 230  Q
    |||| ||||||||||| || |||||  ||||||   ||| |||||||||||||| |||||| |  ||||| | ||||||||||||| |||| ||  |  |    
T  17656907 accaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacctatcgacctccgatccaccgaaagaa-accataaaaagtc 17657005  T
Q  231 caaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcg 285  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  17657006 caaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcg 17657060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 32945680 - 32945760
Alignment:
Q  204 gtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    |||||||||||||||| |||||   |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  32945680 gtccaccgaaagaacatcaaaaaagcccaaaaccaaacttgaatcaaagaattgactcccgatctcgaatcaaaagtgatc 32945760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 287
Target Start/End: Complemental strand, 35062593 - 35062478
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcga 271  Q
    |||||||| ||||| ||||| |  |||||||| ||||||||| ||||||| |||   |||||||||||||| |||| | ||||||||| | |||||||||    
T  35062593 atcattcaccttccaccaccgcgcaacctctgatccaccgaaggaacacctaaaaagcccaaaaccaaactagaacaagagaactgactctcgatctcga 35062494  T
Q  272 atcaaaagtgatcggc 287  Q
    |||||||  |||||||    
T  35062493 atcaaaatcgatcggc 35062478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 10248558 - 10248612
Alignment:
Q  232 aaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||    
T  10248558 aaaaccaaacttgagccaaagaactgactcccgatcttgaatcaaaagtgatcgg 10248612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 285
Target Start/End: Original strand, 41791196 - 41791322
Alignment:
Q  159 tcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactga 258  Q
    |||| ||| ||| |||| || |||||| ||||| |  ||||||| ||||| ||||| ||||||||||    ||||||| ||||||||||||||||| |||    
T  41791196 tccttttccaaatatcaatccgcttccaccaccgcgcaacctctagtccatcgaaataacaccaaaaaagtccaaaactaaacttgaaccaaagaagtga 41791295  T
Q  259 cgcccgatctcgaatcaaaagtgatcg 285  Q
    | | ||||||||||||||||| |||||    
T  41791296 ctctcgatctcgaatcaaaagcgatcg 41791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 24995397 - 24995455
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| |||||||||||||||||||||||||||    
T  24995397 cccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 24995455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 31207364 - 31207422
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| |||||||||||||||||||||||||||    
T  31207364 cccaaaatccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 31207422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 10552345 - 10552289
Alignment:
Q  231 caaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||| |||||| ||||||||| |||||||| |||||||||| |||||||    
T  10552345 caaaaccaaactagaaccagagaactgactcccgatctagaatcaaaagcgatcggc 10552289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 16457473 - 16457521
Alignment:
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||||    
T  16457473 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 16457521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 9519578 - 9519520
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| |||||||||||||||||| ||||||||    
T  9519578 cccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaactgatcggc 9519520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 17819587 - 17819655
Alignment:
Q  8 aacttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataaccacccttcgc 78  Q
    |||||||||||||||| ||||||||||| | |||||||||||| ||||||| |||||||| | ||||||||    
T  17819587 aacttcaccacctaaatcaaactccatcgc-aaacaaccactg-aaaacgaaatccataaacccccttcgc 17819655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 36630916 - 36630858
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| |||||| ||  |||||||||||| ||||||||||||| |||||||||||||    
T  36630916 cccaaaaacaaactagagtcaaagaactgacacccgatctcgaattaaaagtgatcggc 36630858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 3679538 - 3679471
Alignment:
Q  216 aacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgat 283  Q
    ||||||| ||| | || ||| |||||||||| ||||| || ||| |||||||||||||||||||||||    
T  3679538 aacaccataattatcccaaagcaaacttgaatcaaagcaccgactcccgatctcgaatcaaaagtgat 3679471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 20138486 - 20138448
Alignment:
Q  248 caaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  20138486 caaagaactgactcccgatctcaaatcaaaagtgatcgg 20138448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 34389007 - 34389065
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| |  ||||||||||||||||||||||||    
T  34389007 cccaaaaaccaacttgagtcaaagaactgactcttgatctcgaatcaaaagtgatcggc 34389065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 41893412 - 41893454
Alignment:
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtg 281  Q
    |||||||  |||||||||||| |||||||||||||||||||||    
T  41893412 aacttgagacaaagaactgactcccgatctcgaatcaaaagtg 41893454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 25185357 - 25185402
Alignment:
Q  134 catagttgagccacatccgaaaatgtcctattcaaaaaatcattca 179  Q
    ||||| ||||||||||||||||||||| ||||| ||| ||||||||    
T  25185357 catagctgagccacatccgaaaatgtcatattctaaagatcattca 25185402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 15821400 - 15821436
Alignment:
Q  248 caaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  15821400 caaagagctgactcccgatctcgaatcaaaagtgatc 15821436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 37986870 - 37986914
Alignment:
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgat 283  Q
    |||||||  |||||||||||| |||||||||||||||||| ||||    
T  37986870 aacttgagtcaaagaactgactcccgatctcgaatcaaaaatgat 37986914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 40531301 - 40531253
Alignment:
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||| |||||| ||||  | |||||||||||||||||||||||||||    
T  40531301 aacttgcaccaaaaaactagctcccgatctcgaatcaaaagtgatcggc 40531253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 140 - 287
Target Start/End: Complemental strand, 4651947 - 4651801
Alignment:
Q  140 tgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaa 239  Q
    ||||||||||||||| |  ||||  || ||| |||||||||||||| ||||| |  |||||| ||||||||||| |||||||||||   |||||||||||    
T  4651947 tgagccacatccgaagaactccttctctaaagatcattcagcttccaccaccgcgcaacctccggtccaccgaaggaacaccaaaaaagcccaaaaccaa 4651848  T
Q  240 acttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||| |||||| || |||||| |||||||||||||||||||||||||||    
T  4651847 actagaaccagag-actgactcccgatctcgaatcaaaagtgatcggc 4651801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 287
Target Start/End: Complemental strand, 27102327 - 27102212
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcga 271  Q
    |||||||||||||| ||||||||  ||||| | |||||||||||||  |  |||   ||||||||||||||||| ||||||||||||| |||||||||||    
T  27102327 atcattcagcttccaccacctctcgacctccgatccaccgaaagaaaccgtaaaaagcccaaaaccaaacttgatccaaagaactgactcccgatctcga 27102228  T
Q  272 atcaaaagtgatcggc 287  Q
    ||||||||||||||||    
T  27102227 atcaaaagtgatcggc 27102212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 19598782 - 19598657
Alignment:
Q  162 tattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgc 261  Q
    ||||| ||| |||| ||| ||||| |||||||  |||||| || ||||||||||||||||| ||  |||||||| |||||||||  |||||||||||| |    
T  19598782 tattctaaagatcaatcaacttccaccacctcacaacctccggaccaccgaaagaacaccataaaaacccaaaatcaaacttgagtcaaagaactgactc 19598683  T
Q  262 ccgatctcgaatcaaaagtgatcggc 287  Q
     ||||||||||||||||| |||||||    
T  19598682 tcgatctcgaatcaaaagcgatcggc 19598657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 17033734 - 17033607
Alignment:
Q  162 tattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaaccaaa-cttgaaccaaagaactgac 259  Q
    ||||| ||| |||| ||||||| |  |||||| ||||||| ||  | |||||||||||| ||||  | |||||||||||| |||||||||||||||||||    
T  17033734 tattctaaagatcaatcagcttgcatcacctcataacctcaggatcgccgaaagaacacaaaaaaaagcccaaaaccaaaacttgaaccaaagaactgac 17033635  T
Q  260 gcccgatctcgaatcaaaagtgatcggc 287  Q
     ||||||||||| |||||||||||||||    
T  17033634 tcccgatctcgattcaaaagtgatcggc 17033607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 284
Target Start/End: Original strand, 50589141 - 50589264
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacg 260  Q
    |||||| ||| |||| ||| ||||  |||||||  ||||||||||||||||||||||||| |||    ||||||||||||||||  ||||||||||| |     
T  50589141 ctattccaaagatcaatcaacttctaccacctcacaacctctggtccaccgaaagaacactaaataagcccaaaaccaaacttgggccaaagaactggct 50589240  T
Q  261 cccgatctcgaatcaaaagtgatc 284  Q
    |||||| |||||||||||| ||||    
T  50589241 cccgatttcgaatcaaaagcgatc 50589264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 5389423 - 5389481
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| |||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  5389423 cccaaaaacaaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 5389481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 16577437 - 16577351
Alignment:
Q  132 accatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaac 218  Q
    |||| ||||||||||||||||||||  |||||||| ||| |||||||||||||| |||||||| ||||||   || |||||||||||    
T  16577437 accaaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccaccacctctcaacctccaatctaccgaaagaac 16577351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 287
Target Start/End: Original strand, 38544671 - 38544798
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaa-cttgaaccaaagaactgac 259  Q
    |||||| ||| |||| ||| ||||| |||| |||||| ||| | | || ||| ||||||| ||||   | |||||||||| ||| |||||||||||||||    
T  38544671 ctattctaaagatcaatcatcttccaccacttcttaatctccgattcatcgagagaacactaaaaaacctcaaaaccaaaacttaaaccaaagaactgac 38544770  T
Q  260 gcccgatctcgaatcaaaagtgatcggc 287  Q
     ||||||||||||||||||| |||||||    
T  38544771 tcccgatctcgaatcaaaagcgatcggc 38544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 31585762 - 31585820
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| |||||||||||||||||||||||||||    
T  31585762 cccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 31585820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 41920531 - 41920473
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| |||||||||||||||||||||||||||    
T  41920531 cccaaaatccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 41920473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 286
Target Start/End: Complemental strand, 42374311 - 42374185
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaa-cttgaaccaaagaactgac 259  Q
    |||||| ||| |||| ||||||||| |||||||| || ||| |||   |||||||||| |||||    |||||||||||| |||||||||||  ||||||    
T  42374311 ctattctaaagatcaatcagcttccaccacctctcaatctccggtatgccgaaagaacgccaaacaagcccaaaaccaaaacttgaaccaaaagactgac 42374212  T
Q  260 gcccgatctcgaatcaaaagtgatcgg 286  Q
     ||||||||| ||||||||| ||||||    
T  42374211 tcccgatctcaaatcaaaagcgatcgg 42374185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 46692821 - 46692879
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | ||||||| |||||||||| || |||||||||||||||||||||||||||    
T  46692821 cccaaaaaccaacttgagccaaagaactaactcccgatctcgaatcaaaagtgatcggc 46692879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 286
Target Start/End: Complemental strand, 27905542 - 27905434
Alignment:
Q  173 tcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaa 272  Q
    |||| |||||||| |||||||| |||||| ||||||||||||  |||||| |    |||||||| |||| |||| ||||||||| ||  | |||||||||    
T  27905542 tcatacagcttccaccacctctcaacctccggtccaccgaaa--acaccatag---cccaaaacaaaacatgaatcaaagaactaacttctgatctcgaa 27905448  T
Q  273 tcaaaagtgatcgg 286  Q
    ||||||||||||||    
T  27905447 tcaaaagtgatcgg 27905434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 38548848 - 38548920
Alignment:
Q  1 caaaattaacttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataaccaccc 73  Q
    |||||| ||| ||||||||||||||| ||||  |||| |||| | |||||||||||||||| |||||||||||    
T  38548848 caaaataaacatcaccacctaaaacagactctttcacgaaacgatcactgaaaaacgatattcataaccaccc 38548920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 30685906 - 30685964
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| ||||||||| |||||||||||||||||    
T  30685906 cccaaaagccaacttgagtcaaagaactgactcccgatctcaaatcaaaagtgatcggc 30685964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 42374444 - 42374386
Alignment:
Q  12 tcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataacca 70  Q
    ||||||||||||||||| ||| |||| |||| |||||||||||||  ||||||||||||    
T  42374444 tcaccacctaaaacaaattccttcacgaaacgaccactgaaaaactgtatccataacca 42374386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 9313309 - 9313346
Alignment:
Q  247 ccaaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  9313309 ccaaagaactgactcccgatctcgaatcaaaagtgatc 9313346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 10785461 - 10785510
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaa 278  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||| |||||    
T  10785461 cccaaaaccaaacttgagccaaacaactgactcccgatctcgaagcaaaa 10785510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 27031789 - 27031900
Alignment:
Q  178 cagcttccgccacctcttaacctctggtccaccgaaagaacac----caaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaat 273  Q
    |||||||| | |||||| |||||| | |||||||||||| |||    ||||||  ||| ||| | ||||||| ||||||| ||||| | |||||||||||    
T  27031789 cagcttccacaacctctcaacctccgatccaccgaaagagcacaaaacaaaat--ccctaaaaccaacttgagccaaagagctgactctcgatctcgaat 27031886  T
Q  274 caaaagtgatcggc 287  Q
    ||||||||||||||    
T  27031887 caaaagtgatcggc 27031900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 5459230 - 5459182
Alignment:
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||| |||| || |||| |||||||||||||||||||||||||||    
T  5459230 aacttgaatcaaataattgactcccgatctcgaatcaaaagtgatcggc 5459182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 46814479 - 46814527
Alignment:
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| ||||| | ||||| |||||||||||||||||||||||||||    
T  46814479 aacttgagccaaaaagctgactcccgatctcgaatcaaaagtgatcggc 46814527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 286
Target Start/End: Original strand, 6583129 - 6583275
Alignment:
Q  140 tgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaa-cca 238  Q
    |||||| ||||||||||  ||||||   ||| |||| ||||||||| ||||||||  ||||| | | ||||||||||| |||| ||  | | |||| |||    
T  6583129 tgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctctcgacctccgattcaccgaaagaa-accataaaaagcaaaaaacca 6583227  T
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    ||  ||| |||||||| ||||  |||||||||||||||||||||||||    
T  6583228 aaactgatccaaagaattgactgccgatctcgaatcaaaagtgatcgg 6583275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 15840923 - 15840969
Alignment:
Q  238 aaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    ||||||||| |||  ||||||| ||||||||||||||||||||||||    
T  15840923 aaacttgaatcaagaaactgactcccgatctcgaatcaaaagtgatc 15840969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 24659008 - 24658954
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgat 283  Q
    ||||||| | ||||| | ||||||| ||||| |||||||||||||||||||||||    
T  24659008 cccaaaaaccaacttcagccaaagagctgactcccgatctcgaatcaaaagtgat 24658954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 32864563 - 32864617
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgat 283  Q
    |||||||||||||||||  |||||||| |||  |||||||||||| |||||||||    
T  32864563 cccaaaaccaaacttgagtcaaagaaccgacttccgatctcgaattaaaagtgat 32864617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 49820424 - 49820347
Alignment:
Q  1 caaaattaacttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataaccacccttcgcc 79  Q
    |||||| ||| ||||||||||||| | ||||| | |  |||| | |||||||||||||||||||||||||||| |||||    
T  49820424 caaaataaacatcaccacctaaaaaagactcctt-atgaaacgagcactgaaaaacgatatccataaccacccgtcgcc 49820347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 46603458 - 46603421
Alignment:
Q  242 ttgaaccaaagaactgacgcccgatctcgaatcaaaag 279  Q
    |||||||||||||||||| | |||||||||||||||||    
T  46603458 ttgaaccaaagaactgactctcgatctcgaatcaaaag 46603421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 2877967 - 2877923
Alignment:
Q  11 ttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaa 55  Q
    |||||| |||||| ||||||||||| |||||||||| ||||||||    
T  2877967 ttcaccgcctaaatcaaactccatcgcaaaacaacctctgaaaaa 2877923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 9081508 - 9081563
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcg 285  Q
    ||||||| ||||||||| | |||| |||| | |||||||||||||||||||||||||    
T  9081508 cccaaaagcaaacttga-ctaaagcactggctcccgatctcgaatcaaaagtgatcg 9081563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 16147633 - 16147585
Alignment:
Q  230 ccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaa 278  Q
    |||||| ||||||||| ||||||||||||| |||||| | |||||||||    
T  16147633 ccaaaatcaaacttgacccaaagaactgactcccgatattgaatcaaaa 16147585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 287
Target Start/End: Original strand, 20701713 - 20701863
Alignment:
Q  137 agttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaa 235  Q
    ||||||||||||| ||||||  |||||| | ||| |||||||||||||| | ||||||  ||||| | ||||||||||||| |||| ||  | |||||||    
T  20701713 agttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactacctctcgacctccgatccaccgaaagaa-accataaaaagcccaaaa 20701811  T
Q  236 ccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||| | |||||||||| || |||||||||||||||||||||||||||    
T  20701812 ccaaacttaagccaaagaactaactcccgatctcgaatcaaaagtgatcggc 20701863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 159 - 287
Target Start/End: Original strand, 26215951 - 26216079
Alignment:
Q  159 tcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactga 258  Q
    |||| ||| ||| |||| ||||||||| ||||| |  || ||| |||||||| ||||||||||||||   ||||||||||||  |||||| |||||||||    
T  26215951 tccttttccaaagatcaatcagcttccaccaccgcgcaatctccggtccaccaaaagaacaccaaaaaagcccaaaaccaaaactgaaccgaagaactga 26216050  T
Q  259 cgcccgatctcgaatcaaaagtgatcggc 287  Q
    | |||||||||||||||||||||||||||    
T  26216051 ctcccgatctcgaatcaaaagtgatcggc 26216079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 9224178 - 9224065
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaactgacgcccgatctcg 270  Q
    |||||||||||||| ||||| |  |||||| ||| |||||||||| |||||| |  | ||||||||||||  ||||||||||||||||| ||||||||||    
T  9224178 atcattcagcttccaccaccgcacaacctccggtgcaccgaaagagcaccaataaaagcccaaaaccaaaactgaaccaaagaactgactcccgatctcg 9224079  T
Q  271 aatcaaaagtgatc 284  Q
    ||||||||| ||||    
T  9224078 aatcaaaagcgatc 9224065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 26534660 - 26534779
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaa---ctgacgcccgatc 267  Q
    |||| ||||||||| ||||| |  |||||  ||||||||||||||||||| |||  | ||||||||||||||||||||||||||   ||||| ||| |||    
T  26534660 atcaatcagcttccaccaccgcacaaccttcggtccaccgaaagaacacctaaaaaagcccaaaaccaaacttgaaccaaagaagaactgactcccaatc 26534759  T
Q  268 tcgaatcaaaagtgatcggc 287  Q
    ||||||||||||||||||||    
T  26534760 tcgaatcaaaagtgatcggc 26534779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 21266222 - 21266134
Alignment:
Q  199 ctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||| |||||||||||| |   ||||||||||||||||||||| | |||| || ||||||||||||||||||| |||||||    
T  21266222 ctctggtccaccaaaagaacaccaacaaagcccaaaaccaaacttgaaccacataactaactcccgatctcgaatcaaaagcgatcggc 21266134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 287
Target Start/End: Original strand, 32935258 - 32935399
Alignment:
Q  146 acatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttga 245  Q
    |||||||||||  || | ||| ||| ||||| |||||||| |||||||  ||||| ||  ||||||||||||||| ||||    |||||| |||||||||    
T  32935258 acatccgaaaaactcatgttcgaaagatcatgcagcttccaccacctcccaacctttgaaccaccgaaagaacactaaaaaagtccaaaatcaaacttga 32935357  T
Q  246 accaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
      | |||||||||| ||||||||||||||||||| |||||||    
T  32935358 gtccaagaactgactcccgatctcgaatcaaaagcgatcggc 32935399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 284
Target Start/End: Original strand, 33968549 - 33968670
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacg 260  Q
    |||||| ||| |||| ||||||||| ||| |||| |||||  |||||  | ||||||||  |||||  || ||| | ||||||||||||||||||||||     
T  33968549 ctattctaaagatcaatcagcttccaccatctctcaaccttcggtccgtcaaaagaacaaaaaaat--ccaaaatcaaaacttgaaccaaagaactgact 33968646  T
Q  261 cccgatctcgaatcaaaagtgatc 284  Q
    ||||||||||||||||||| ||||    
T  33968647 cccgatctcgaatcaaaagcgatc 33968670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 13423545 - 13423488
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    |||| |||||||||||| ||||||||| ||| | ||||||||||||||||||||||||    
T  13423545 cccataaccaaacttgagccaaagaaccgactctcgatctcgaatcaaaagtgatcgg 13423488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 21265091 - 21265015
Alignment:
Q  203 ggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaag 279  Q
    |||||| | |||||||||||| |   ||||||||||||||||||||| | |||| || |||||||||||||||||||    
T  21265091 ggtccatcaaaagaacaccaacaaagcccaaaaccaaacttgaaccagataactaactcccgatctcgaatcaaaag 21265015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 3117572 - 3117514
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| | |||||||  |||||||||||| |||||||| ||||||||||||||||||    
T  3117572 cccaaaaaccaacttgagtcaaagaactgactcccgatcttgaatcaaaagtgatcggc 3117514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 5746895 - 5746819
Alignment:
Q  11 ttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataaccacccttcgcctttactcac 88  Q
    |||||| ||||||||| |||||||| |||| ||||||||||||||| | |||||||| ||||| |||||  |||||||    
T  5746895 ttcaccgcctaaaacatactccatcgcaaa-caaccactgaaaaactaaatccataagcacccatcgccgctactcac 5746819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 13098550 - 13098629
Alignment:
Q  206 ccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcg 285  Q
    ||||||||||||||| ||||   || |||||||||||||| |||||||||| || ||| |||| |||||| ||| |||||    
T  13098550 ccaccgaaagaacacaaaaaaagccaaaaaccaaacttgagccaaagaactaactcccaatcttgaatcagaagagatcg 13098629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 15944147 - 15944040
Alignment:
Q  181 cttccgccacctcttaacctctggtccaccgaaagaacacc-aaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaag 279  Q
    ||||| |||||||  ||||||||||| ||| |||||| ||| |||| | || |||| |||  ||||||||| |||||||| || || ||| |||||||||    
T  15944147 cttcctccacctcaaaacctctggtcaaccaaaagaaaacctaaaaagcccaaaaaacaagattgaaccaaggaactgactccagaactctaatcaaaag 15944048  T
Q  280 tgatcggc 287  Q
    ||||||||    
T  15944047 tgatcggc 15944040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 34105468 - 34105434
Alignment:
Q  253 aactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| |||||||||||||||||||||||||||    
T  34105468 aactgactcccgatctcgaatcaaaagtgatcggc 34105434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 32316438 - 32316393
Alignment:
Q  238 aaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgat 283  Q
    ||||||||| ||||||||| ||  ||||||||||||||||||||||    
T  32316438 aaacttgaatcaaagaacttactaccgatctcgaatcaaaagtgat 32316393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 12794191 - 12794143
Alignment:
Q  232 aaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagt 280  Q
    ||||| ||||||| ||| |||||||||| || |||||||||||||||||    
T  12794191 aaaactaaacttggacccaagaactgactcctgatctcgaatcaaaagt 12794143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 286
Target Start/End: Complemental strand, 35800625 - 35800511
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcga 271  Q
    ||||||||| |||| ||||| |  |||||| |||||||||||||||||||||||   |||||||||||||| ||| ||||||||||||  ||||||||||    
T  35800625 atcattcaggttccaccaccgcgaaacctccggtccaccgaaagaacaccaaaaaagcccaaaaccaaactggaatcaaagaactgacttccgatctcga 35800526  T
Q  272 atcaaaagtgatcgg 286  Q
    |||||||| ||||||    
T  35800525 atcaaaagcgatcgg 35800511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 140 - 283
Target Start/End: Original strand, 53823333 - 53823477
Alignment:
Q  140 tgagccacatccgaaaatgtcctattcaaaaa-atcattcagcttccgccacctcttaacctctggtccaccgaaagaacacca-aaatgacccaaaacc 237  Q
    |||||||||||| ||||  |||||| |||||| |||| ||| ||||| ||||||||  ||||  | || |||||||||| |||| |||  ||||||||||    
T  53823333 tgagccacatcctaaaagctcctatccaaaaagatcaatcaacttccaccacctctcgaccttcgatcaaccgaaagaa-accataaaaaacccaaaacc 53823431  T
Q  238 aaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgat 283  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||    
T  53823432 aaacttgagccaaagaactgactcccgatctcgaatcaaaagtgat 53823477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 287
Target Start/End: Complemental strand, 38929974 - 38929848
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacg 260  Q
    |||||| ||| |||| ||| ||||| |||||||  |||||| ||  |||||||||||||||| ||   ||||||| ||||||||| |||||||||||||     
T  38929974 ctattccaaagatcaatcaacttccaccacctcacaacctccggatcaccgaaagaacaccataaaagcccaaaatcaaacttgagccaaagaactgact 38929875  T
Q  261 cccgatctcgaatcaaaagtgatcggc 287  Q
    |  ||||||||||||||||||||||||    
T  38929874 cttgatctcgaatcaaaagtgatcggc 38929848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 12296305 - 12296204
Alignment:
Q  178 cagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaa 277  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||||||   ||||||| |||||||||||||||||||||||    ||||||||||||||    
T  12296305 cagcttccaccaccacacaacctccggtccaccgaaagaacaccaaaaaagcccaaaatcaaacttgaaccaaagaactgacttttgatctcgaatcaaa 12296206  T
Q  278 ag 279  Q
    ||    
T  12296205 ag 12296204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 284
Target Start/End: Original strand, 41117880 - 41118024
Alignment:
Q  140 tgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacacca-aaatgacccaaaacca 238  Q
    |||||||| |||| |||  |||||||| ||| |||||||||||||| ||||||||  ||||||| |||| |||||||| |||| |||   |||||||||     
T  41117880 tgagccacctccgcaaagctcctattcgaaagatcattcagcttccaccacctctcgacctctgatccatcgaaagaa-accataaaaagcccaaaacct 41117978  T
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    || |||| |||||||||| ||  |||||||||||||||||||||||    
T  41117979 aatttgagccaaagaacttacttccgatctcgaatcaaaagtgatc 41118024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 28967003 - 28966897
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaaca-ccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcg 270  Q
    |||| ||||||||| |||||||  |||||| || |||||||||||||| || ||| | ||||||||||||||||| ||||||||||||| ||| ||||||    
T  28967003 atcaatcagcttccaccacctcacaacctccggaccaccgaaagaacatcctaaaag-cccaaaaccaaacttgagccaaagaactgactcccaatctcg 28966905  T
Q  271 aatcaaaa 278  Q
    ||||||||    
T  28966904 aatcaaaa 28966897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 273
Target Start/End: Complemental strand, 19673276 - 19673135
Alignment:
Q  132 accatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgaccc 231  Q
    |||| |||| |||||||||||||||  || ||| ||||| |||||| ||||||| ||| || |  |||   | ||||||||||||||||||| |  ||||    
T  19673276 accaaagtttagccacatccgaaaagttcatatccaaaatatcatttagcttccaccatctatcgaccgtcgatccaccgaaagaacaccaacaaaaccc 19673177  T
Q  232 aaaaccaaacttgaaccaaagaactgacgcccgatctcgaat 273  Q
    ||||| |||||||| ||||||||||||| || ||||||||||    
T  19673176 aaaactaaacttgagccaaagaactgactcctgatctcgaat 19673135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 286
Target Start/End: Original strand, 19815125 - 19815283
Alignment:
Q  132 accatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgaccc 231  Q
    |||| |||| ||||||||| |||||  |||||| | ||| |||||| ||||||| ||| ||||  ||||| |||||||||||||||||||||    ||||    
T  19815125 accaaagtttagccacatcggaaaagttcctatccgaaagatcatttagcttccaccatctctcgacctccggtccaccgaaagaacaccaatcaaaccc 19815224  T
Q  232 aaaac----caaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    |||||     |||||||| ||||||||||||| || |||||||||| |||||| |||||    
T  19815225 aaaactaattaaacttgagccaaagaactgactcctgatctcgaataaaaagtaatcgg 19815283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 25753251 - 25753195
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcg 285  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  25753251 cccaaaatcaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcg 25753195  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 16501810 - 16501752
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||    
T  16501810 cccaaaaccaaactagaaccaaagagctgactcccgatctcgaatcaaaagcgatcggc 16501752  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 46698765 - 46698837
Alignment:
Q  208 accgaaagaacaccaaaatgacccaaaaccaaa-cttgaaccaaagaactgacgcccgatctcgaatcaaaag 279  Q
    |||||||||||||| |||   ||||||| |||| ||||||||||||||||||| |||||||||||||||||||    
T  46698765 accgaaagaacacctaaacagcccaaaaacaaaacttgaaccaaagaactgactcccgatctcgaatcaaaag 46698837  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 22811165 - 22811220
Alignment:
Q  232 aaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||    
T  22811165 aaaaccaaacttgagccaaagaactgactcccgatctcgaataaaaaatgatcggc 22811220  T

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Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 21387173 - 21387263
Alignment:
Q  196 aacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcgg 286  Q
    |||||| ||||||| ||| |||||||||| |  ||||||   ||||||||| | ||||||||||  |||||||||||||||||||||||||    
T  21387173 aacctccggtccactgaacgaacaccaaattagcccaaataaaaacttgaatcgaagaactgacttccgatctcgaatcaaaagtgatcgg 21387263  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 38637178 - 38637292
Alignment:
Q  172 atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaactgacgcccgatctcg 270  Q
    |||||||||||||| ||||||||  ||||| | |||||| |||||| |||| ||  | ||||||||| | ||| | |||||||| |||| ||||||||||    
T  38637178 atcattcagcttccaccacctctcgacctccgatccaccaaaagaa-accataaaaagcccaaaaccta-cttaagccaaagaattgactcccgatctcg 38637275  T
Q  271 aatcaaaagtgatcggc 287  Q
    |||||||||||||||||    
T  38637276 aatcaaaagtgatcggc 38637292  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 49747604 - 49747548
Alignment:
Q  231 caaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||||||||||| | ||||||||||| | ||||||| |||||||||||||||||    
T  49747604 caaaaccaaacttgatcaaaagaactgactctcgatctcaaatcaaaagtgatcggc 49747548  T

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Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 20632268 - 20632335
Alignment:
Q  12 tcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccataaccacccttcgcc 79  Q
    ||||| ||||||||| ||||  ||||||||||||||||||| |||||||  ||||||||||| |||||    
T  20632268 tcaccccctaaaacagactctttcacaaaacaaccactgaagaacgatacacataaccacccgtcgcc 20632335  T

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Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 23440203 - 23440262
Alignment:
Q  9 acttcaccacctaaaacaaactccatcacaaaacaaccactgaaa-aacgatatccataa 67  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||| ||||| ||||||||    
T  23440203 acttcaccacctaaatcaaactccatcataaaacgaccactgaaacaacgaaatccataa 23440262  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 21983755 - 21983853
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgac 259  Q
    |||||| ||| |||| ||| ||||| |||||||  |||||| || ||||||||||||||||| ||   |||| ||| |||||||| |||||||||||||    
T  21983755 ctattctaaagatcaatcaacttccaccacctcacaacctccggaccaccgaaagaacaccataaaagcccataactaaacttgagccaaagaactgac 21983853  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 24740071 - 24740163
Alignment:
Q  196 aacctctggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||| | ||||| ||||||||  ||||| || |||||||||||| |||||||||| ||||||| |||||||| |||| | ||| |||||||    
T  24740071 aacctccgatccacggaaagaacgacaaaaagagcccaaaaccaaatttgaaccaaataactgactcccgatcttgaattataagcgatcggc 24740163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 283
Target Start/End: Complemental strand, 48098509 - 48098358
Alignment:
Q  132 accatagttgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cc 230  Q
    |||| ||||||||||||||||||||  ||||||   ||| ||| |||| ||||| ||||||||  ||||  | |||| |||||||| || | ||  | ||    
T  48098509 accaaagttgagccacatccgaaaagctcctatctgaaagatcgttcatcttccaccacctctcgaccttcgatccatcgaaagaa-actataaaaagcc 48098411  T
Q  231 caaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgat 283  Q
    ||||||||||||| | ||||  ||||||| |||||||||||| ||||||||||    
T  48098410 caaaaccaaacttaatccaacaaactgactcccgatctcgaaacaaaagtgat 48098358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 12296424 - 12296389
Alignment:
Q  44 accactgaaaaacgatatccataaccacccttcgcc 79  Q
    |||||||||||||||||||||||||||||| |||||    
T  12296424 accactgaaaaacgatatccataaccacccatcgcc 12296389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 30964521 - 30964462
Alignment:
Q  228 acccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    |||||||| | |||||||  |||||||| ||| ||||||| |||||||||||||||||||    
T  30964521 acccaaaaaccaacttgagtcaaagaacggactcccgatcacgaatcaaaagtgatcggc 30964462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 4305794 - 4305748
Alignment:
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcg 285  Q
    |||||||  ||||||||| || |||||||||||||||||||||||||    
T  4305794 aacttgagacaaagaactaactcccgatctcgaatcaaaagtgatcg 4305748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 30167576 - 30167622
Alignment:
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcg 285  Q
    |||||||  |||||||| ||| |||||||||||||||||||||||||    
T  30167576 aacttgagtcaaagaaccgactcccgatctcgaatcaaaagtgatcg 30167622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 39421015 - 39421073
Alignment:
Q  229 cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||||||||  ||| | || ||| |||| |||||||||||||||||||||||||||    
T  39421015 cccaaaaccaaaactgatctaaggaattgactcccgatctcgaatcaaaagtgatcggc 39421073  T

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Target: scaffold0200 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 19516 - 19404
Alignment:
Q  175 attcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaat 273  Q
    ||||||||||| ||| ||||  ||||| | ||||||||||||| |||| ||  | ||||||||||||||||| |||||||||||||  ||||||||||||    
T  19516 attcagcttccaccaactctcgacctccgatccaccgaaagaa-accataaaaagcccaaaaccaaacttgagccaaagaactgacttccgatctcgaat 19418  T
Q  274 caaaagtgatcggc 287  Q
    ||||||||||||||    
T  19417 caaaagtgatcggc 19404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 287
Target Start/End: Original strand, 42051 - 42198
Alignment:
Q  141 gagccacatccgaaaatgtcctattcaaaaa-atcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatga-cccaaaacca 238  Q
    ||||||||| ||||||  |||||| | |||| || ||||||||||| ||| ||||  ||||| | ||||| ||||||| |||| ||  | ||||||||||    
T  42051 gagccacattcgaaaagctcctatccgaaaagattattcagcttccaccaactctcgacctccgatccactgaaagaa-accataaaaatcccaaaacca 42149  T
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  42150 aacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggc 42198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 287
Target Start/End: Original strand, 950 - 1077
Alignment:
Q  161 ctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaa-cttgaaccaaagaactgac 259  Q
    |||||| ||| |||| ||| ||||| |||| |||||| ||| | | || ||| ||||||| ||||   | |||||||||| ||| |||||||||||||||    
T  950 ctattctaaagatcaatcatcttccaccacttcttaatctccgattcatcgagagaacactaaaaaacctcaaaaccaaaacttaaaccaaagaactgac 1049  T
Q  260 gcccgatctcgaatcaaaagtgatcggc 287  Q
     ||||||||||||||||||| |||||||    
T  1050 tcccgatctcgaatcaaaagcgatcggc 1077  T

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Target: scaffold0499 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 6670 - 6581
Alignment:
Q  196 aacctctggtccaccgaaagaacaccaaaatgacccaaaaccaaacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcg 285  Q
    ||||||| | ||||||||||||||| ||||   || |||||||||||||| |||||||||| ||  || |||| |||||||||| |||||    
T  6670 aacctctagaccaccgaaagaacacaaaaaaagccaaaaaccaaacttgagccaaagaactaactaccaatcttgaatcaaaagagatcg 6581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 287
Target Start/End: Complemental strand, 58295 - 58148
Alignment:
Q  140 tgagccacatccgaaaatgtcctattcaaaaaatcattcagcttccgccacctcttaacctctggtccaccgaaagaacaccaaaatgaccc-aaaacca 238  Q
    |||||||||| ||||||  || ||| | ||| || |||||||||||  || ||||  ||||| | ||||||||||||| |||| ||  | || |||||||    
T  58295 tgagccacattcgaaaagctcttatccgaaagataattcagcttccatcatctctcgacctccgatccaccgaaagaa-accataaaaagcctaaaacca 58197  T
Q  239 aacttgaaccaaagaactgacgcccgatctcgaatcaaaagtgatcggc 287  Q
    ||||||| ||||| || ||||  ||||||| ||||||||||||||||||    
T  58196 aacttgatccaaacaattgacttccgatcttgaatcaaaagtgatcggc 58148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 36767 - 36731
Alignment:
Q  248 caaagaactgacgcccgatctcgaatcaaaagtgatc 284  Q
    |||||||||||| ||||||||||||||||||||||||    
T  36767 caaagaactgactcccgatctcgaatcaaaagtgatc 36731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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