View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8895_low_26 (Length: 262)
Name: NF8895_low_26
Description: NF8895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8895_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 31346502 - 31346273
Alignment:
| Q |
11 |
cacagagagaaattcattcaacaaaaacaa----aagatgcatgctatatgagggagaggtctacaccttatctccatcatatatatggaaaattcttat |
106 |
Q |
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| T |
31346502 |
cacatagagaaattcattcaacaaaaacaattaaaagatgcatgctatatgagggagaggtctacagcttatctccatcatatatatggaaaattcttat |
31346403 |
T |
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| Q |
107 |
gatgatatgcgagccgatccaatggaagacacaatatatttgtttattttcttaaggataagctgattcagctattagatgaccataaaattcctctagt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31346402 |
gatgatatgcgagccgatccaatggaagacacaatatatttgtttattttcttaaggataagctgattcagctattagatgaccataaaattcctctagt |
31346303 |
T |
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| Q |
207 |
caaggagatcaaaagcaagaggtattgtaa |
236 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31346302 |
caaggagatcaaaagcaagaggtattgtaa |
31346273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 31357139 - 31357036
Alignment:
| Q |
16 |
agagaaattcattcaacaaaaacaaaagatgcatgctatatgagggagaggtctacaccttatctccatcatatatatggaaaattcttatgatgatatg |
115 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31357139 |
agagaaattcattcaacaaaaagaaaagatgcatgctatctgagg---aggtctacaccttatctccatcatatatatggaaaattcttatgatgatatg |
31357043 |
T |
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| Q |
116 |
cgagccg |
122 |
Q |
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|||||| |
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| T |
31357042 |
tgagccg |
31357036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 31357015 - 31356962
Alignment:
| Q |
194 |
aaattcctctagtcaaggagatcaaaagcaagaggtattgtaatttgtaaataa |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31357015 |
aaattcctctagtcaaggagatcaaaagcaagaggtattgtaatttgtaaataa |
31356962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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