View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8895_low_3 (Length: 480)
Name: NF8895_low_3
Description: NF8895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8895_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Complemental strand, 39474689 - 39474227
Alignment:
| Q |
18 |
acatcctaaataagcaaataaaaataacaatcaaaagtatccatatggtttcatccaatcacatcataacaatactataatccaaaacactgagaatgac |
117 |
Q |
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| T |
39474689 |
acatcctaaataagcaaataaaaataacaatcaaaagtatccatatggtttcatccaatcgcatcataacaatactataatccaaaatactgagaatgac |
39474590 |
T |
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| Q |
118 |
aagactaggaactacactgtgggtacttgatatatacttacagagttgtaagactttttagagctcctattctaggtgtcaaggatccagcgaatcccat |
217 |
Q |
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| T |
39474589 |
aagactaggaactacactgtgggtacttgatatatacttacagagttgtaagactttttagagctcctattctaggtgtcaaggatccagcgaatcccat |
39474490 |
T |
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| Q |
218 |
aaatgctagcgaactgcaatgaagtaatttatataattttacagccacagaaacaaatcttcaagcataaataaggtaatgacttttttagcatcttttc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39474489 |
aaatgctagcgaactgcaatgaagtaatttatataattttacagccacagacacaaatcttcaagcataaataaggtaatgacttttttagcatcttttc |
39474390 |
T |
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| Q |
318 |
cggatcaaataactaaaaacaaaattgttgaagattgcaataagaaaaaacccttacacttgaacaacattgctgttctggtcgcagtaaacattggacc |
417 |
Q |
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| T |
39474389 |
cagatcaaataactaaaaacacaattgttgaagattgcaataagaaaaaacccttacacttgaacaacattgctgttctggtcgcagtaaacattggacc |
39474290 |
T |
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| Q |
418 |
aagtacaagggtttacttgatttttgttccagttagtaagctggttgggtgaagcattcagag |
480 |
Q |
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| T |
39474289 |
aagtacaagggtttacttgatttttgttccagttagtaagctggttgggtgaagcattcagag |
39474227 |
T |
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