View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8895_low_4 (Length: 453)

Name: NF8895_low_4
Description: NF8895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8895_low_4
NF8895_low_4
[»] chr5 (3 HSPs)
chr5 (156-446)||(32026378-32026668)
chr5 (10-157)||(32026179-32026329)
chr5 (362-403)||(41484312-41484353)
[»] chr1 (3 HSPs)
chr1 (156-414)||(29451510-29451762)
chr1 (293-396)||(35306231-35306335)
chr1 (360-425)||(16300175-16300240)
[»] chr4 (3 HSPs)
chr4 (331-398)||(26829389-26829457)
chr4 (344-398)||(34494467-34494522)
chr4 (361-397)||(12567036-12567072)
[»] chr2 (4 HSPs)
chr2 (293-397)||(7444446-7444549)
chr2 (360-398)||(13016794-13016832)
chr2 (360-398)||(33406638-33406676)
chr2 (287-397)||(8856010-8856122)
[»] chr3 (2 HSPs)
chr3 (293-419)||(35231224-35231351)
chr3 (368-428)||(25909546-25909606)
[»] chr7 (1 HSPs)
chr7 (295-398)||(23416343-23416447)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 156 - 446
Target Start/End: Original strand, 32026378 - 32026668
Alignment:
Q  156 tatagtttcagaaaatgtaacttcaaccacttgctattataattatatgnnnnnnnggtacaatagttatgtgttttctaatcattttaatagaatataa 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  32026378 tatagtttcagaaaatgtaacttcaaccacttgctattataattatatgtttttttggtacaatagttatgtgttttctaatcattttaatagaatataa 32026477  T
Q  256 atgctttacttttatatattagtattttaaattaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaatga 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32026478 atgctttacttttatatattagtattttaaattaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaataatga 32026577  T
Q  356 aacataaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattccataatgttcctctctgctcc 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  32026578 aacataaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattccataatgttcctttatgctcc 32026668  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 32026179 - 32026329
Alignment:
Q  10 catcattataaaatttatcaatcgtaaaaacataacagttctcgtagtgattaattacttgcttgcgttattttttatttaaagaaaatagcttgctgca 109  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32026179 catcattataaaatttatcaatcgtaaaagcataacagttctcgtagtgattaattacttgcttgcgttattttttatttaaagaaaatagcttgctgca 32026278  T
Q  110 ctttttgttggtca----tcattaactttttaatacctgttattaataatta 157  Q
    |||||| |||||||    |  |  ||||||||||||||||||||||||||||    
T  32026279 cttttt-ttggtcaagcttgctgcactttttaatacctgttattaataatta 32026329  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 403
Target Start/End: Original strand, 41484312 - 41484353
Alignment:
Q  362 aatttgttccgctccatcataaaatatccaaacaatgaaatg 403  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  41484312 aatttgttccgttccatcgtaaaatatccaaacaatgaaatg 41484353  T

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Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 156 - 414
Target Start/End: Original strand, 29451510 - 29451762
Alignment:
Q  156 tatagtttcagaaaatgtaacttcaaccacttgctattataattatatgnnnnnnnggtacaatagttatgtgttttctaatcattttaatagaatataa 255  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||||         ||||||| |||| |||||||||||||||| || | |||||||    
T  29451510 tatagctttagaaaatgtaacttcaaccacttgttattataattatatgtttttct--tacaataattatatgttttctaatcatttaaaaaaaatataa 29451607  T
Q  256 atgctttacttttatatattagtattttaaattaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaat-g 354  Q
    |||||||  ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||     |||| |||||||| ||| |    
T  29451608 atgctttgattttatataatagtattttaaattaaagaaaggtaaaattggaataaaaaatttatgactcagttca-----tcaacaatccaaataatgg 29451702  T
Q  355 aaacataaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctatt 414  Q
    ||  ||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||    
T  29451703 aatgataaatttgttccgctgaatcataaaatatccaaacaatggaatgagctatttatt 29451762  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 396
Target Start/End: Complemental strand, 35306335 - 35306231
Alignment:
Q  293 aagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaat-gaaacataaatttgttccgctccatcataaaatatcca 391  Q
    ||||||||| ||||||||||||| |||| || |||| ||||||||||||  |||||||||| |||  | || | | |||||||||||||||| ||| |||    
T  35306335 aagggtaaaattggaataaaaaaattataactcattccattccgtcaattttccaaacaatggaatgagaattctattccgctccatcataatataccca 35306236  T
Q  392 aacaa 396  Q
    |||||    
T  35306235 aacaa 35306231  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 16300240 - 16300175
Alignment:
Q  360 taaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattc 425  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||   || |||| ||||||||||||    
T  16300240 taaatttattccgctccatcatataatatccaaacaatggaattgactgtctactccatttcattc 16300175  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 26829389 - 26829457
Alignment:
Q  331 attccgtcaataatccaaacaatg-aaacataaatttgttccgctccatcataaaatatccaaacaatg 398  Q
    ||||||| |||  ||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||    
T  26829389 attccgttaattttccaaacaatggaaaggtaaatttgttccgctccatcataaaatacccaaacaatg 26829457  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 398
Target Start/End: Complemental strand, 34494522 - 34494467
Alignment:
Q  344 tccaaacaatg-aaacataaatttgttccgctccatcataaaatatccaaacaatg 398  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||  |||||||||    
T  34494522 tccaaacaatggaaaggtaaatttgttccgctccatcataaaatactcaaacaatg 34494467  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 12567036 - 12567072
Alignment:
Q  361 aaatttgttccgctccatcataaaatatccaaacaat 397  Q
    |||| |||||||||||||||||||||| |||||||||    
T  12567036 aaatctgttccgctccatcataaaatacccaaacaat 12567072  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 397
Target Start/End: Complemental strand, 7444549 - 7444446
Alignment:
Q  293 aagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaatgaaacataaatttgttccgctccatcataaaatatccaa 392  Q
    ||||||||| |||||||||||||||||| || | || | || |||||||  |||||||||||||  | ||||  |||||| ||||||||||| |||||||    
T  7444549 aagggtaaaattggaataaaaaatttataactcgttccgtttcgtcaatt-tccaaacaatgaataaaaaataagttccgttccatcataaagtatccaa 7444451  T
Q  393 acaat 397  Q
    |||||    
T  7444450 acaat 7444446  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 13016794 - 13016832
Alignment:
Q  360 taaatttgttccgctccatcataaaatatccaaacaatg 398  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  13016794 taaatttgttccgctccatcataaaatactcaaacaatg 13016832  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 33406676 - 33406638
Alignment:
Q  360 taaatttgttccgctccatcataaaatatccaaacaatg 398  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  33406676 taaatatgttctgctccatcataaaatatccaaacaatg 33406638  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 397
Target Start/End: Original strand, 8856010 - 8856122
Alignment:
Q  287 ttaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgt-caataatccaaacaatgaaacata-aatttgttccgctccatcataaa 384  Q
    ||||| |||||||||  || ||||||||| |||| || |||| |||||||| || |  ||||||||||| ||||   ||||||||||||||| ||||| |    
T  8856010 ttaaacaagggtaaaaatgaaataaaaaagttataacacattccattccgttcatttttccaaacaatggaacaagtaatttgttccgctccgtcatata 8856109  T
Q  385 atatccaaacaat 397  Q
    ||| |||||||||    
T  8856110 atacccaaacaat 8856122  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 419
Target Start/End: Complemental strand, 35231351 - 35231224
Alignment:
Q  293 aagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaat-gaaacataaatttgttccgctccatcataaaatatcca 391  Q
    ||||||||| ||||||||||||| |||| || |||| ||||||||||||  |||||||||| |||  | || | | |||||||||||| ||| ||| |||    
T  35231351 aagggtaaaattggaataaaaaaattataactcattccattccgtcaattttccaaacaatggaatgagaattctattccgctccatcgtaatataccca 35231252  T
Q  392 aacaatgaaatgagctatctattccatt 419  Q
    ||||| | | ||| || |||||||||||    
T  35231251 aacaaaggagtgaactctctattccatt 35231224  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 428
Target Start/End: Original strand, 25909546 - 25909606
Alignment:
Q  368 ttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattccat 428  Q
    ||||| |||||||||||||||||||||| || |||||  |||||||||||||  |||||||    
T  25909546 ttccgttccatcataaaatatccaaacagtggaatgaaatatctattccattcgattccat 25909606  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 398
Target Start/End: Complemental strand, 23416447 - 23416343
Alignment:
Q  295 gggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaatgaaacata-aatttgttccgctccatcataaaatatccaaa 393  Q
    |||||||  ||||||||||||||||| || |||| ||||||||  ||  ||||||||||| || |   |||||||||||||||||  || |||| |||||    
T  23416447 gggtaaaaatggaataaaaaatttataacacattccattccgttcattttccaaacaatggaataagtaatttgttccgctccattgtataatacccaaa 23416348  T
Q  394 caatg 398  Q
    |||||    
T  23416347 caatg 23416343  T

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