View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8895_low_6 (Length: 405)

Name: NF8895_low_6
Description: NF8895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8895_low_6
NF8895_low_6
[»] chr4 (4 HSPs)
chr4 (4-397)||(43576584-43576977)
chr4 (276-360)||(5240445-5240529)
chr4 (276-360)||(10653842-10653926)
chr4 (276-360)||(10867987-10868071)
[»] chr7 (6 HSPs)
chr7 (4-397)||(42126066-42126459)
chr7 (109-162)||(26084100-26084153)
chr7 (109-162)||(26107887-26107940)
chr7 (278-348)||(38846392-38846462)
chr7 (296-370)||(37012169-37012243)
chr7 (296-328)||(19606873-19606905)
[»] chr8 (5 HSPs)
chr8 (131-397)||(15295939-15296205)
chr8 (131-397)||(15476308-15476574)
chr8 (4-84)||(15296227-15296307)
chr8 (4-84)||(15476596-15476676)
chr8 (109-159)||(29155130-29155180)
[»] chr1 (4 HSPs)
chr1 (92-309)||(46654114-46654331)
chr1 (276-360)||(2360662-2360746)
chr1 (278-345)||(47706471-47706538)
chr1 (109-159)||(10733100-10733150)
[»] chr6 (5 HSPs)
chr6 (109-162)||(4501499-4501552)
chr6 (109-162)||(15825051-15825104)
chr6 (109-162)||(34311045-34311098)
chr6 (276-360)||(14815903-14815987)
chr6 (284-328)||(14617253-14617297)
[»] chr5 (2 HSPs)
chr5 (109-162)||(549689-549742)
chr5 (109-161)||(30280101-30280153)
[»] scaffold1049 (1 HSPs)
scaffold1049 (109-161)||(1216-1268)
[»] chr2 (1 HSPs)
chr2 (101-188)||(35552771-35552858)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 4 - 397
Target Start/End: Complemental strand, 43576977 - 43576584
Alignment:
Q  4 gagtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttacaaacttgattaggagcagagagagtaagaccaggagga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43576977 gagtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttacaaacttgattaggagcagagagagtaagaccaggagga 43576878  T
Q  104 ggttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43576877 ggttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaa 43576778  T
Q  204 gaactctaatagttgtcatctttaccacaggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttata 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43576777 gaactctaatagttgtcatctttaccacaggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttata 43576678  T
Q  304 tctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagttgatgtccat 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43576677 tctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagttaatgtccat 43576584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 360
Target Start/End: Complemental strand, 5240529 - 5240445
Alignment:
Q  276 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 360  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| | |||||| ||| | |||| |||||||| |||| |||||    
T  5240529 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcaacatgaaatttgactttgtaaatccatctacatccaat 5240445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 360
Target Start/End: Complemental strand, 10653926 - 10653842
Alignment:
Q  276 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 360  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| ||||||||  || | |||| |||||||| |||| |||||    
T  10653926 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcagcatgaaacttgactttgtaaatccatctacatccaat 10653842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 360
Target Start/End: Complemental strand, 10868071 - 10867987
Alignment:
Q  276 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 360  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| | ||||||  || | |||| |||||||| |||| |||||    
T  10868071 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcaacatgaaaattgactttgtaaatccatctacatccaat 10867987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 4 - 397
Target Start/End: Complemental strand, 42126459 - 42126066
Alignment:
Q  4 gagtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttacaaacttgattaggagcagagagagtaagaccaggagga 103  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||    
T  42126459 gagtttggtgttccattgtctacttgcctgttttaatccataaagggatctttgcagtttacaaacttgattaggagcaaagagagtaaaaccaggagga 42126360  T
Q  104 ggttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaa 203  Q
    || ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  42126359 ggctgcatgtatacttctccattgagatcaccatgaaaaaaggcagtattgacatcaagctggtaaataggccaatttttagaagcagcaatagacagaa 42126260  T
Q  204 gaactctaatagttgtcatctttaccacaggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttata 303  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42126259 gaactctaatagttgtcatctttaccacaggactgaatgtgtccttatagtcaataccttatgtttgtgtgaaacctttggcaacaagtctggccttata 42126160  T
Q  304 tctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagttgatgtccat 397  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  42126159 tctctcaatggtgccattagcatgaagcttaagtttgaaaatccatttacaatcaatggctttcttatgagcaggcagtgaagttaatgtccat 42126066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 26084100 - 26084153
Alignment:
Q  109 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 162  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  26084100 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 26084153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 26107887 - 26107940
Alignment:
Q  109 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 162  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  26107887 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 26107940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 38846392 - 38846462
Alignment:
Q  278 cctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatcca 348  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||  |||||| | |||| |||| |||||||    
T  38846392 cctttagcaacaagtctagccttgtatctctcaatggtgccatctgcatgatgcttaactttgtaaatcca 38846462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 37012243 - 37012169
Alignment:
Q  296 gccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaatggctttctta 370  Q
    ||||||||||| |||||||||||||||||||||  ||||| |||  | | |||||||||||| || | |||||||    
T  37012243 gccttatatctttcaatggtgccattagcatgatatttaattttatagacccatttacaaccgataggtttctta 37012169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 19606873 - 19606905
Alignment:
Q  296 gccttatatctctcaatggtgccattagcatga 328  Q
    ||||||||||| |||||||||||||||||||||    
T  19606873 gccttatatctttcaatggtgccattagcatga 19606905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 131 - 397
Target Start/End: Complemental strand, 15296205 - 15295939
Alignment:
Q  131 tcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaagaactctaatagttgtcatctttacca 230  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| ||||| || ||||| |||||||| ||||||||||||||||    
T  15296205 tcaccatgaagaaatgtagtattgacatctagctggtaaagagaccaattttgagaagcggcaatggaaagaaggactctaatggttgtcatctttacca 15296106  T
Q  231 caggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaag 330  Q
    | ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  15296105 ctggactgaatgtgtccatataatcaataccttctgtttgtgtgaaacctttagcaacaagtctggccttatatctttcaatggtgccattagtatgaag 15296006  T
Q  331 tttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagttgatgtccat 397  Q
     ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||  |||||||    
T  15296005 cttaagtttgaaaatccatttacaaccaatggctttctaatgagccggcaatgaagttagtgtccat 15295939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 131 - 397
Target Start/End: Complemental strand, 15476574 - 15476308
Alignment:
Q  131 tcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaagaactctaatagttgtcatctttacca 230  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| ||||| || ||||| |||||||| ||||||||||||||||    
T  15476574 tcaccatgaagaaatgtagtattgacatctagctggtaaagagaccaattttgagaagcggcaatggaaagaaggactctaatggttgtcatctttacca 15476475  T
Q  231 caggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaag 330  Q
    | ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  15476474 ctggactgaatgtgtccatataatcaataccttctgtttgtgtgaaacctttagcaacaagtctggccttatatctttcaatggtgccattagtatgaag 15476375  T
Q  331 tttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagttgatgtccat 397  Q
     ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||  |||||||    
T  15476374 cttaagtttgaaaatccatttacaaccaatggctttctaatgagccggcaatgaagttagtgtccat 15476308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 15296307 - 15296227
Alignment:
Q  4 gagtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttacaaacttgattaggagcaga 84  Q
    |||||||||||||||||   | ||| ||||||| |||||||| || ||||||||| | ||||| |||||||| ||||||||    
T  15296307 gagtttggtgttccattacttactttcctgtttcaatccatatagtgatctttgtcgcttacacacttgattgggagcaga 15296227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 15476676 - 15476596
Alignment:
Q  4 gagtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttacaaacttgattaggagcaga 84  Q
    |||||||||||||||||   | ||| ||||||| |||||||| || ||||||||| | ||||| |||||||| ||||||||    
T  15476676 gagtttggtgttccattacttactttcctgtttcaatccatatagtgatctttgtcgcttacacacttgattgggagcaga 15476596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 29155180 - 29155130
Alignment:
Q  109 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatc 159  Q
    ||||||||||||||| | ||||||||||||||| || ||| ||||||||||    
T  29155180 catgtatacttcttcctcgagatcaccatgaaggaaagcattattgacatc 29155130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 92 - 309
Target Start/End: Complemental strand, 46654331 - 46654114
Alignment:
Q  92 agaccaggaggaggttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcag 191  Q
    ||||||||||||| |||||| || ||||||||||| | ||||||| ||||||| ||||||||||||||||| ||  | |  ||||| ||||||||||| |    
T  46654331 agaccaggaggagcttgcatatagacttcttcattcaaatcaccacgaagaaaggcagtattgacatcaagttgaaataagggccagttttgagaagctg 46654232  T
Q  192 caatagacagaagaactctaatagttgtcatctttaccacaggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaag 291  Q
    ||||||  | ||||  ||||| | ||||||| ||||| ||| || |||| ||||||||||| || || ||||||||||||||||| || ||||| || |     
T  46654231 caatagctataagagttctaacaattgtcatttttactacatgattgaaagtgtccatgtaatctatgccttctgtttgtgtgaagcccttggcgaccaa 46654132  T
Q  292 tctggccttatatctctc 309  Q
    |||||||||||| |||||    
T  46654131 tctggccttatacctctc 46654114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 360
Target Start/End: Complemental strand, 2360746 - 2360662
Alignment:
Q  276 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 360  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| |||||| | ||| | |||| |||||||| |||| |||||    
T  2360746 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcagcatggaatttgactttgtaaatccatctacatccaat 2360662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 47706471 - 47706538
Alignment:
Q  278 cctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaat 345  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||  |||||| | |||| |||| ||||    
T  47706471 cctttagcaacaagtctagccttgtatctctcaatggtgccatctgcatgatgcttaactttgtaaat 47706538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 10733150 - 10733100
Alignment:
Q  109 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatc 159  Q
    ||||||||||||||| | ||||||||||||||| || ||| ||||||||||    
T  10733150 catgtatacttcttcctcgagatcaccatgaaggaaagcattattgacatc 10733100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 4501552 - 4501499
Alignment:
Q  109 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 162  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  4501552 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 4501499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 15825104 - 15825051
Alignment:
Q  109 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 162  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  15825104 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 15825051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 34311098 - 34311045
Alignment:
Q  109 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 162  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  34311098 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 34311045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 360
Target Start/End: Complemental strand, 14815987 - 14815903
Alignment:
Q  276 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 360  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| |||||||| ||| | |||| |||||||| |||| |||||    
T  14815987 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcagcatgaaatttgactttgtaaatccatctacatccaat 14815903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 14617297 - 14617253
Alignment:
Q  284 gcaacaagtctggccttatatctctcaatggtgccattagcatga 328  Q
    ||||| ||||| ||||||||||| |||||||||||||| ||||||    
T  14617297 gcaaccagtcttgccttatatctttcaatggtgccatttgcatga 14617253  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 549689 - 549742
Alignment:
Q  109 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 162  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  549689 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 549742  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 30280101 - 30280153
Alignment:
Q  109 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaa 161  Q
    |||||| |||||||||||||| |||||||| ||||||||| ||||||||||||    
T  30280101 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaa 30280153  T

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Target: scaffold1049 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 1216 - 1268
Alignment:
Q  109 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaa 161  Q
    |||||| |||||||||||||| |||||||| ||||||||| ||||||||||||    
T  1216 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaa 1268  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 35552858 - 35552771
Alignment:
Q  101 ggaggttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaag 188  Q
    |||||||||||||| ||||||||||  ||||  ||||||||||| ||  | || |||||||  ||  |||||||||||||||||||||    
T  35552858 ggaggttgcatgtaaacttcttcatcaagatgtccatgaagaaaagccttgttaacatcaatttgaaaaagaggccaattttgagaag 35552771  T

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