View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8895_low_7 (Length: 399)
Name: NF8895_low_7
Description: NF8895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8895_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 46984742 - 46984338
Alignment:
| Q |
1 |
aatgaagatgtcgctcttgctattggaacggtactgccaacagctaagtgagctgtttatttcttttctttttggctctacttattacagctgttcctgg |
100 |
Q |
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| T |
46984742 |
aatgaagatgtcgctcttgctattggaacggtactgccaacagctaagtgagctgtttatttcttttctttttggctctacttattacagctgttcctgg |
46984643 |
T |
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| Q |
101 |
aatg------atgtttaaagattggtgtgaagttaaatctttgcattggacttcatcctttctatgcaaaatgcaatttaactaattgaccataacgact |
194 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46984642 |
aatgttaaacatgtttaaagattggtgtgaagttaaatctttgcattggacttcatcctttctatgcaaaatgcaatttaactaattgaccataacgact |
46984543 |
T |
|
| Q |
195 |
ctaacattgattataatcttatcacggtgggaattttcaattaacttagagctttgttttttagtgtgttagcctctatctatcatcatagtaaagcata |
294 |
Q |
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| T |
46984542 |
ctaacattgattataatcttatcacggtgggaattttcaattaacttagagctttgttttttagtgtgttagcctctatctatcatcatagtaaagcata |
46984443 |
T |
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| Q |
295 |
gatttctgttactttgtctccaggctttgctgcaggctcttggtgataggaagggtattaaccggtttggtaacttctctgctccacttgatgaagcatt |
394 |
Q |
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| T |
46984442 |
gatttctgttacttcgtctccaggctttgctgcaggctcttggtgataggaagggtattaaccggtttggtaacttctctgctccgcttgatgaagcatt |
46984343 |
T |
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| Q |
395 |
agttc |
399 |
Q |
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| T |
46984342 |
agttc |
46984338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 31685090 - 31684987
Alignment:
| Q |
296 |
atttctgttactttgtctccaggctttgctgcaggctcttggtgataggaagggtattaaccggtttggtaacttctctgctccacttgatgaagcatta |
395 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31685090 |
atttctattacttcatctccaggctttgctgcaggctcttggtgataggaatggtattaaccggtttggtaacttctctgctccgcttgatgaagcatta |
31684991 |
T |
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| Q |
396 |
gttc |
399 |
Q |
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|||| |
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| T |
31684990 |
gttc |
31684987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 394
Target Start/End: Complemental strand, 17899818 - 17899739
Alignment:
| Q |
315 |
caggctttgctgcaggctcttggtgataggaagggtattaaccggtttggtaacttctctgctccacttgatgaagcatt |
394 |
Q |
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||||||||| |||| || ||||| ||||| || || ||||||| ||| || ||||||||||||| |||||||||||||| |
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| T |
17899818 |
caggctttgttgcaagcccttggagatagaaaaggaattaacccgttcggagacttctctgctcctcttgatgaagcatt |
17899739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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