View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8896_low_1 (Length: 659)

Name: NF8896_low_1
Description: NF8896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8896_low_1
NF8896_low_1
[»] chr2 (26 HSPs)
chr2 (236-643)||(33069150-33069564)
chr2 (38-241)||(33068894-33069103)
chr2 (475-643)||(33087848-33088016)
chr2 (475-643)||(33061429-33061597)
chr2 (475-635)||(33048315-33048475)
chr2 (519-643)||(33079408-33079532)
chr2 (38-241)||(33077052-33077252)
chr2 (331-385)||(18719723-18719775)
chr2 (306-385)||(42094273-42094351)
chr2 (336-379)||(45300363-45300406)
chr2 (306-376)||(1930669-1930739)
chr2 (237-299)||(42094295-42094357)
chr2 (331-395)||(1469719-1469783)
chr2 (307-375)||(42251163-42251231)
chr2 (238-305)||(6979084-6979150)
chr2 (237-296)||(16209471-16209530)
chr2 (236-299)||(44487245-44487308)
chr2 (241-299)||(9430230-9430288)
chr2 (331-385)||(9430232-9430286)
chr2 (237-299)||(12779486-12779547)
chr2 (237-299)||(25666891-25666953)
chr2 (331-381)||(42029437-42029487)
chr2 (306-375)||(44247538-44247607)
chr2 (336-401)||(16209475-16209542)
chr2 (331-375)||(23001430-23001474)
chr2 (331-375)||(25666798-25666842)
[»] chr4 (22 HSPs)
chr4 (476-618)||(18485441-18485582)
chr4 (331-385)||(21433863-21433917)
chr4 (237-299)||(21433966-21434028)
chr4 (313-385)||(16577243-16577315)
chr4 (306-384)||(33413994-33414072)
chr4 (314-385)||(1338423-1338492)
chr4 (306-399)||(15134541-15134636)
chr4 (345-398)||(16458028-16458083)
chr4 (241-305)||(21433861-21433925)
chr4 (306-382)||(45654081-45654157)
chr4 (331-375)||(52375012-52375056)
chr4 (344-396)||(17508742-17508796)
chr4 (306-385)||(21433943-21434022)
chr4 (241-299)||(31758677-31758733)
chr4 (263-344)||(34119650-34119728)
chr4 (240-299)||(52374904-52374963)
chr4 (306-385)||(52374907-52374986)
chr4 (237-299)||(7403176-7403238)
chr4 (237-375)||(993219-993352)
chr4 (331-376)||(34119639-34119684)
chr4 (331-379)||(21203924-21203972)
chr4 (331-379)||(27269032-27269080)
[»] scaffold0003 (1 HSPs)
scaffold0003 (331-384)||(136416-136469)
[»] chr1 (19 HSPs)
chr1 (314-379)||(31970116-31970181)
chr1 (236-299)||(21281460-21281524)
chr1 (331-401)||(49822623-49822695)
chr1 (307-375)||(34437598-34437666)
chr1 (236-299)||(7444374-7444437)
chr1 (306-385)||(34437667-34437746)
chr1 (306-385)||(38663641-38663720)
chr1 (237-299)||(34437690-34437752)
chr1 (331-401)||(40669024-40669094)
chr1 (336-385)||(15366491-15366540)
chr1 (336-376)||(2542701-2542741)
chr1 (263-299)||(16661825-16661861)
chr1 (237-296)||(7444265-7444324)
chr1 (331-382)||(16661808-16661859)
chr1 (237-299)||(939427-939489)
chr1 (336-394)||(16257624-16257682)
chr1 (237-298)||(40669023-40669082)
chr1 (263-300)||(31970130-31970167)
chr1 (307-375)||(40668931-40668997)
[»] chr8 (13 HSPs)
chr8 (237-305)||(27072902-27072970)
chr8 (306-376)||(40175964-40176034)
chr8 (331-385)||(40566551-40566605)
chr8 (236-299)||(20271106-20271169)
chr8 (236-299)||(21057734-21057797)
chr8 (314-385)||(27072893-27072964)
chr8 (236-299)||(40566549-40566612)
chr8 (306-380)||(34504447-34504521)
chr8 (331-368)||(34504384-34504421)
chr8 (314-366)||(3311609-3311661)
chr8 (263-299)||(34504387-34504423)
chr8 (336-397)||(40694589-40694652)
chr8 (306-362)||(40696201-40696257)
[»] chr7 (16 HSPs)
chr7 (315-382)||(49106984-49107051)
chr7 (306-396)||(12275808-12275900)
chr7 (314-400)||(2276254-2276338)
chr7 (306-385)||(47497770-47497849)
chr7 (331-385)||(5443624-5443678)
chr7 (331-385)||(5452669-5452723)
chr7 (236-299)||(5443513-5443576)
chr7 (236-299)||(5452558-5452621)
chr7 (308-375)||(7017158-7017225)
chr7 (308-375)||(7032516-7032583)
chr7 (306-383)||(40134456-40134531)
chr7 (240-305)||(3235546-3235611)
chr7 (258-299)||(3235652-3235693)
chr7 (331-384)||(26647682-26647735)
chr7 (314-398)||(12275715-12275799)
chr7 (238-298)||(31042124-31042184)
[»] chr3 (17 HSPs)
chr3 (331-398)||(35357292-35357361)
chr3 (309-376)||(3901566-3901633)
chr3 (236-299)||(36007448-36007511)
chr3 (258-300)||(3300728-3300770)
chr3 (335-375)||(19560728-19560768)
chr3 (236-299)||(26986276-26986339)
chr3 (336-375)||(44890437-44890476)
chr3 (306-385)||(51541315-51541394)
chr3 (309-375)||(3901499-3901565)
chr3 (306-352)||(19158682-19158728)
chr3 (340-385)||(1458641-1458686)
chr3 (308-385)||(32880987-32881064)
chr3 (263-299)||(3901509-3901545)
chr3 (306-366)||(29955047-29955107)
chr3 (306-366)||(30004201-30004261)
chr3 (331-400)||(36480680-36480751)
chr3 (331-400)||(51541218-51541289)
[»] chr6 (11 HSPs)
chr6 (306-385)||(1473605-1473684)
chr6 (336-385)||(12731654-12731703)
chr6 (331-400)||(17389992-17390063)
chr6 (336-397)||(24110039-24110102)
chr6 (331-404)||(28865485-28865559)
chr6 (237-296)||(31946914-31946973)
chr6 (236-305)||(12731537-12731606)
chr6 (336-385)||(31946918-31946967)
chr6 (336-376)||(3150312-3150352)
chr6 (331-383)||(9645012-9645064)
chr6 (331-383)||(9651029-9651081)
[»] chr5 (14 HSPs)
chr5 (331-403)||(42420112-42420186)
chr5 (306-375)||(3907724-3907793)
chr5 (314-398)||(3907631-3907715)
chr5 (263-299)||(28907378-28907414)
chr5 (263-299)||(28943773-28943809)
chr5 (314-384)||(25545211-25545279)
chr5 (331-382)||(28907361-28907412)
chr5 (331-382)||(28943756-28943807)
chr5 (308-385)||(38029533-38029607)
chr5 (331-385)||(22399760-22399814)
chr5 (266-299)||(3907747-3907780)
chr5 (336-398)||(42249385-42249449)
chr5 (336-381)||(42420011-42420056)
chr5 (237-305)||(22399754-22399822)
[»] scaffold0137 (1 HSPs)
scaffold0137 (307-376)||(8251-8320)
[»] scaffold0015 (1 HSPs)
scaffold0015 (314-382)||(200951-201019)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-138; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 236 - 643
Target Start/End: Original strand, 33069150 - 33069564
Alignment:
Q  236 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc-----------------acccacataattt 318  Q
    ||||||||||||||| ||||| |||| |||||||||| | | ||||||||||||||||||||||||||||                 |||||||||||||    
T  33069150 ttagcaacacacattctatcacacacttttcaacacactttctttgatcggttaaaattcacattagacccaccaagtttatatgggacccacataattt 33069249  T
Q  319 agtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtggctagcatttctcataaatgtttagtatttacc 418  Q
    ||||||||| | ||||||||||||||||||||||||||| |||||||| |          |||||  |||||||||| |  |||||||||||||||||||    
T  33069250 agtgggacccaagtgatttttaaccaatcaaaaagagtgtgttgaaaatt----------atgtgacgctagcattttttttaaatgtttagtatttacc 33069339  T
Q  419 cgtttagctcatttctcttttgaaatatgtataagactaaggtcatgttgtttgcctaggttggtttaagtggtgcattggacacactctgcggacaagc 518  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33069340 cgtttagctcatttgtcttttgaaacatgtataagactaaggtcatgttgtttgcctaggttggtttaagtggtgcactggacacactctgcggacaagc 33069439  T
Q  519 atttggtgcaaaagaatatcacatgttgggaatttatctacaaagctcttgcattatatcttttattttttccatcattatatcaattatttggttctat 618  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33069440 atttggtgcaaaagaatatcacatgttaggaatttatctacaaagctcttgcattatatcttttattttttccatcattatatcaattatttggttctat 33069539  T
Q  619 acagaacacattctagtgctacttc 643  Q
    ||||||| |||||||||| ||||||    
T  33069540 acagaacccattctagtgttacttc 33069564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 38 - 241
Target Start/End: Original strand, 33068894 - 33069103
Alignment:
Q  38 ttgatagtcgaatgaacatttgtatataaatttgacatgctttattttgtttgttttagtatttgcactataaaaacttaatattgtattatatcattgt 137  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33068894 ttgatggtcgaatgaacaattgtatataaatttgacatgctttattttgtttgttt-agtatttgcactataaaaacttaatattgtattatatcattgt 33068992  T
Q  138 ttgatctacgtagctgattgattccatc-------tcgtaattttttgaatatttaatatatgatttttagtccactataatattagtgttttccaaaca 230  Q
    ||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  33068993 ttgatctacgtagatgattgattccatctcttcaatcgtaattttttgaatatttaatatataacttttagtccactataatattagtgttttccaaaca 33069092  T
Q  231 catgtttagca 241  Q
    |||||||||||    
T  33069093 catgtttagca 33069103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 475 - 643
Target Start/End: Original strand, 33087848 - 33088016
Alignment:
Q  475 taggttggtttaagtggtgcattggacacactctgcggacaagcatttggtgcaaaagaatatcacatgttgggaatttatctacaaagctcttgcatta 574  Q
    |||||||| |||||||||||||| || |||||||||||||||| |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  33087848 taggttggcttaagtggtgcattagaaacactctgcggacaaggatttggcgcaaaagaatatcacaagttgggaatttacctacaaagctcttgcatta 33087947  T
Q  575 tatcttttattttttccatcattatatcaattatttggttctatacagaacacattctagtgctacttc 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  33087948 tatcttttattttttccatcattatatcaattatttggttctatacagaacccattctagtgttacttc 33088016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 475 - 643
Target Start/End: Original strand, 33061429 - 33061597
Alignment:
Q  475 taggttggtttaagtggtgcattggacacactctgcggacaagcatttggtgcaaaagaatatcacatgttgggaatttatctacaaagctcttgcatta 574  Q
    ||||||||||||||||||||||| || |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33061429 taggttggtttaagtggtgcattagaaacactctgcggacaaggatttggcgcaaaagaatatcacatgttgggaatttatctacaaggctcttgcatta 33061528  T
Q  575 tatcttttattttttccatcattatatcaattatttggttctatacagaacacattctagtgctacttc 643  Q
    ||||||| |||||||| ||  ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  33061529 tatctttcattttttcaatatttatatccattatttggttctatacagaacacattctagtgttacttc 33061597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 475 - 635
Target Start/End: Original strand, 33048315 - 33048475
Alignment:
Q  475 taggttggtttaagtggtgcattggacacactctgcggacaagcatttggtgcaaaagaatatcacatgttgggaatttatctacaaagctcttgcatta 574  Q
    ||||||||||||||||||||| | || |||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  33048315 taggttggtttaagtggtgcactagaaacactctgtggacaaggatttggtgcaaaggaatatcacatgttgggaatttatctacaaggctcttgcatta 33048414  T
Q  575 tatcttttattttttccatcattatatcaattatttggttctatacagaacacattctagt 635  Q
    ||||||| |||||||| ||  ||||||| ||||||||||||||||||||||||||||||||    
T  33048415 tatctttcattttttcaatatttatatccattatttggttctatacagaacacattctagt 33048475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 519 - 643
Target Start/End: Original strand, 33079408 - 33079532
Alignment:
Q  519 atttggtgcaaaagaatatcacatgttgggaatttatctacaaagctcttgcattatatcttttattttttccatcattatatcaattatttggttctat 618  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33079408 atttggtgcaaaagaatatcacatgttaggaatttatctacaaagctcttgcattatatcttttattttttccatcattatatcaattatttggttctat 33079507  T
Q  619 acagaacacattctagtgctacttc 643  Q
    ||||||| |||||||||| ||||||    
T  33079508 acagaacccattctagtgttacttc 33079532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 38 - 241
Target Start/End: Original strand, 33077052 - 33077252
Alignment:
Q  38 ttgatagtcgaatgaacatttgtatataaatttgacatgctttattttgtttgttttagtatttgcactataaaaacttaatattgtattatatcattgt 137  Q
    ||||||||| |||||||||||||||| ||||||| |||||||||||||||||| | ||  |     ||||  ||||||  || |||||||||||| ||||    
T  33077052 ttgatagtcaaatgaacatttgtataaaaatttggcatgctttattttgtttgctctataaa----acta--aaaactcgatgttgtattatatcgttgt 33077145  T
Q  138 ttgatctacgtagctgattgattc-catc--tcgtaattttttgaatatttaatatatgatttttagtccactataatattagtgttttccaaacacatg 234  Q
    |||||||||||||||||||    | | ||  || |||||||| ||||||||||||||  | |||||||||||| |||| |||||||||||||||||||||    
T  33077146 ttgatctacgtagctgattccaactcttcaatcataatttttagaatatttaatatacaaattttagtccactgtaattttagtgttttccaaacacatg 33077245  T
Q  235 tttagca 241  Q
    |||||||    
T  33077246 tttagca 33077252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 18719775 - 18719723
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||| |||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  18719775 gtgaattttaaccaatcaaaaagagtgtgttgaaaaat--gtgttagaatgtgtg 18719723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 42094273 - 42094351
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||||||| |||| ||||||||| | ||| ||||||||||||||| || ||| |||||||| ||||||||| ||||||||    
T  42094273 acccacatgatttggtgggaccatg-tgaattttaaccaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtgtg 42094351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 45300406 - 45300363
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaa 379  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  45300406 ttttaaccaatcaaaaggagtgtgttgaaaaatgtgtgttagaa 45300363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 1930739 - 1930669
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtta 376  Q
    |||||||||||||  ||| ||  | |||| ||||||||||||||||||||||  |||||||||||||||||    
T  1930739 acccacataatttgatggaacatatgtgaattttaaccaatcaaaaagagtgtcttgaaaaatgtgtgtta 1930669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 42094357 - 42094295
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    ||||||||||||||||| || |||| ||||||||||  || |||||| |||||||||||||||    
T  42094357 tagcaacacacattttaacacacacttttcaacacacactctttgattggttaaaattcacat 42094295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 1469783 - 1469719
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtggctagcattt 395  Q
    |||| ||||||||||| ||| |||||| |||||||||| ||||||| ||||||| ||||| ||||    
T  1469783 gtgaattttaaccaattaaatagagtgtgttgaaaaatatgtgttaaaatgtgtcgctagtattt 1469719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 42251231 - 42251163
Alignment:
Q  307 cccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    |||||||||||| |||||||| | | || |||||||| |||||| |||||| || ||||||||||||||    
T  42251231 cccacataatttggtgggacccatgcgaattttaaccgatcaaagagagtgtgtcgaaaaatgtgtgtt 42251163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 6979150 - 6979084
Alignment:
Q  238 agcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc 305  Q
    |||||||||||||||| || |||| |||||||||||| ||||| || |||||||||| ||||| ||||    
T  6979150 agcaacacacattttaacacacacttttcaacacatt-ttttttattggttaaaatttacattggacc 6979084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 16209530 - 16209471
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattca 296  Q
    |||||||||| ||| || ||||||| ||||||| |||||| ||||||| |||||||||||    
T  16209530 tagcaacacatattctaacatacacttttcaacgcattctctttgatcagttaaaattca 16209471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 44487308 - 44487245
Alignment:
Q  236 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    ||||||||| | |||||| || |||| ||| || ||| ||||||||||||||||||||||||||    
T  44487308 ttagcaacatatattttaccacacactttttaatacactctttttgatcggttaaaattcacat 44487245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 9430288 - 9430230
Alignment:
Q  241 aacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||| || || |||| |||||||| ||||| |||||| |||||||||||||||    
T  9430288 aacacacattctaacacacacttttcaacatattctatttgattggttaaaattcacat 9430230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 9430232 - 9430286
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||| ||||||||||||||| ||| |  |||||||| ||||||||||||||||||    
T  9430232 gtgaattttaaccaatcaaatagaatatgttgaaaagtgtgtgttagaatgtgtg 9430286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 12779486 - 12779547
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    ||||||||||| || || ||||||  ||||||||||||| ||||||| |||||||||||||||    
T  12779486 tagcaacacaccttctaacatacatttttcaacacattc-ttttgattggttaaaattcacat 12779547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 25666953 - 25666891
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    ||||||||||||||||| ||||||  |||||||||| ||| ||||||  |||||||| |||||    
T  25666953 tagcaacacacattttaacatacaattttcaacacactctctttgatgtgttaaaatccacat 25666891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 42029437 - 42029487
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatg 381  Q
    |||| ||||||||||| ||||| |||| |||||||| ||||||||||||||    
T  42029437 gtgaattttaaccaataaaaaaaagtgtgttgaaaagtgtgtgttagaatg 42029487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 44247607 - 44247538
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    ||||||||||||| |||| ||| | |||| ||| ||||||||||| | |||  |||||||||||||||||    
T  44247607 acccacataatttggtggaacccatgtgaatttcaaccaatcaaagatagtttgttgaaaaatgtgtgtt 44247538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 336 - 401
Target Start/End: Original strand, 16209475 - 16209542
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttaga--atgtgtggctagcatttctcata 401  Q
    |||||||  |||||| ||| ||||||||||| ||| |||||||  |||||| ||||||||||||||||    
T  16209475 ttttaactgatcaaagagaatgcgttgaaaagtgtatgttagaatatgtgttgctagcatttctcata 16209542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 23001474 - 23001430
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    |||| ||||||||||||||| |||||  |||||||||||||||||    
T  23001474 gtgaattttaaccaatcaaagagagtatgttgaaaaatgtgtgtt 23001430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 25666842 - 25666798
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    |||| |||||| |||||||| |||||| |||||||||||||||||    
T  25666842 gtgaattttaatcaatcaaatagagtgtgttgaaaaatgtgtgtt 25666798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 476 - 618
Target Start/End: Original strand, 18485441 - 18485582
Alignment:
Q  476 aggttggtttaagtggtgcattggacacactctgcggacaagcatttggtgcaaaagaatatcacatgttgggaatttatctacaaagctcttgcattat 575  Q
    ||||||||||| |||||||| | || |||||||  | ||| | ||||||||| || |||||||||||||||||||||||  ||||| |||| |||||| |    
T  18485441 aggttggtttaggtggtgcactagaaacactctatgaacagg-atttggtgccaaggaatatcacatgttgggaatttacttacaaggctcctgcatt-t 18485538  T
Q  576 atcttttattttttcca-tcattatatcaattatttggttctat 618  Q
    |||||| ||||||| || |||||||||||||||| |||||||||    
T  18485539 atctttcatttttttcattcattatatcaattatatggttctat 18485582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 21433917 - 21433863
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  21433917 gtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttaaaatgtgtg 21433863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 21434028 - 21433966
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    ||||||||||||||||| ||||||| |||||||||| |||  ||||| |||||||||||||||    
T  21434028 tagcaacacacattttaacatacacttttcaacacactctcattgattggttaaaattcacat 21433966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 385
Target Start/End: Complemental strand, 16577315 - 16577243
Alignment:
Q  313 taatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||||| |||||||| | || | ||||||| ||||||| ||| || |||||||||||||||||||||||||||    
T  16577315 taatttggtgggacctatgtaaattttaacaaatcaaacagaatgtgttgaaaaatgtgtgttagaatgtgtg 16577243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 33414072 - 33413994
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgt 384  Q
    |||||| | |||| |||||| | | |||| ||||||||||||||| |||||| |||||||| ||||||||| |||||||    
T  33414072 acccacgtgatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttacaatgtgt 33413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 385
Target Start/End: Complemental strand, 1338492 - 1338423
Alignment:
Q  314 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    ||||| |||||| | | |||||||||||||||||||| |||||  |||||||||||||||||| ||| ||||    
T  1338492 aatttggtgggatccatgtgatttttaaccaatcaaagagagt--gttgaaaaatgtgtgttaaaatatgtg 1338423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 399
Target Start/End: Complemental strand, 15134636 - 15134541
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaa--tgtgtggctagcatttctca 399  Q
    ||||| || ||||||| ||||| | |||| ||||||||||| ||| ||| || |||||||||||||||||| ||  |||||  |||||||||||||    
T  15134636 acccaaatgatttagtcggacccatgtgaattttaaccaataaaagagaatgtgttgaaaaatgtgtgttaaaatttgtgttactagcatttctca 15134541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 16458028 - 16458083
Alignment:
Q  345 atcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctc 398  Q
    |||||| |||||| |||||||| ||||||||||||||||||  |||||||||||||    
T  16458028 atcaaagagagtgtgttgaaaagtgtgtgttagaatgtgtgttgctagcatttctc 16458083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 21433861 - 21433925
Alignment:
Q  241 aacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc 305  Q
    ||||||||||||| || |||  |||||||||| ||| |||||| ||||||||||||||| |||||    
T  21433861 aacacacattttaacacacatttttcaacacactctctttgattggttaaaattcacatgagacc 21433925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 45654081 - 45654157
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgt 382  Q
    |||||||| ||||  ||||| | | |||| ||||||||||||||||| |||| ||| |||||| |||||||||||||    
T  45654081 acccacatgatttgatgggatccatgtgaattttaaccaatcaaaaaaagtgtgttaaaaaatatgtgttagaatgt 45654157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 375
Target Start/End: Original strand, 52375012 - 52375056
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||    
T  52375012 gtgaattttaaccaatcaaaaagagtgtattgaaaaatgtgtgtt 52375056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 17508796 - 17508742
Alignment:
Q  344 aatcaaaaagagtgcgttgaaaaatgtgtgttagaatg--tgtggctagcatttc 396  Q
    |||||||||||||| |||||||||||||||||| ||||  ||| |||||||||||    
T  17508796 aatcaaaaagagtgtgttgaaaaatgtgtgttaaaatgcatgttgctagcatttc 17508742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 21433943 - 21434022
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||||||| |||| |||||| | | |||| ||||||||||||||  |||||| |||||||| ||| ||||| ||||||||    
T  21433943 acccacatgatttggtgggatccatgtgaattttaaccaatcaatgagagtgtgttgaaaagtgtatgttaaaatgtgtg 21434022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 31758677 - 31758733
Alignment:
Q  241 aacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    ||||||||||||| ||  ||| |||||||||||||| |||||| |||||||||||||||    
T  31758677 aacacacattttaaca--cacttttcaacacattctatttgattggttaaaattcacat 31758733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 344
Target Start/End: Original strand, 34119650 - 34119728
Alignment:
Q  263 tttcaacacattctttttgatcggttaaaattcacattagaccacccacataatttagtgggaccaaggtgatttttaacca 344  Q
    |||||||||| || ||||||||||||||||||||||| ||   | |||||| ||||||| ||||| | |||| |||||||||    
T  34119650 tttcaacacactcgttttgatcggttaaaattcacatgag---atccacatgatttagtaggacccatgtgaattttaacca 34119728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 52374904 - 52374963
Alignment:
Q  240 caacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||||||| || |||| |||||||||| ||| |||||| | |||||||||||||    
T  52374904 caacacacattttaacacacacttttcaacacactctctttgatagattaaaattcacat 52374963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 385
Target Start/End: Complemental strand, 52374986 - 52374907
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    ||||||||||||| ||| || | | |||| |||||| | |||||| |||||| |||||||| ||||||||| ||||||||    
T  52374986 acccacataatttggtgagatccatgtgaattttaatctatcaaagagagtgtgttgaaaagtgtgtgttaaaatgtgtg 52374907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 7403238 - 7403176
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||| |||||| || ||||  ||||||||| ||| |||||| |||||||||||||||    
T  7403238 tagcaacacatattttaacacacactattcaacacactctctttgattggttaaaattcacat 7403176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 375
Target Start/End: Complemental strand, 993352 - 993219
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagaccacccacataatttagtgggaccaaggtgatt 336  Q
    ||||||||||||| ||| || |||| || ||||| | ||| ||||||  |||| |||||||||  |   |||||||| |||| |||||||  | |||| |    
T  993352 tagcaacacacatcttaacacacactttccaacaaactctctttgatttgttagaattcacatggg---acccacatgatttggtgggactcatgtgaat 993256  T
Q  337 tttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    |||||||||||  |||||||| ||||||| |||||||||    
T  993255 tttaaccaatc--aaagagtgtgttgaaagatgtgtgtt 993219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 34119684 - 34119639
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtta 376  Q
    |||| |||||||| ||||||| ||||| ||||||||||||||||||    
T  34119684 gtgaattttaaccgatcaaaacgagtgtgttgaaaaatgtgtgtta 34119639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 21203924 - 21203972
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaa 379  Q
    |||| ||||||| ||| |||||||||| ||| |||||||||||||||||    
T  21203924 gtgagttttaacaaattaaaaagagtgagttaaaaaatgtgtgttagaa 21203972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 27269032 - 27269080
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaa 379  Q
    |||| ||||||| ||| |||||||||| ||| |||||||||||||||||    
T  27269032 gtgacttttaacaaattaaaaagagtgagttaaaaaatgtgtgttagaa 27269080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 136416 - 136469
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgt 384  Q
    |||| |||||||||||||||||||||| |||||||||||||||||| |||||||    
T  136416 gtgagttttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttaaaatgtgt 136469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 31970181 - 31970116
Alignment:
Q  314 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaa 379  Q
    ||||| |||||  ||| |||| |||||||||||||||||||||| |||||||||||||||||||||    
T  31970181 aatttggtgggttcaatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttagaa 31970116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 21281460 - 21281524
Alignment:
Q  236 ttagcaacacacattttatcatacacatttcaacacattc-tttttgatcggttaaaattcacat 299  Q
    ||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||||||||    
T  21281460 ttagcaacacatattttaacatacacttttcaacacattcttttttgattggttaaaattcacat 21281524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 331 - 401
Target Start/End: Original strand, 49822623 - 49822695
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttaga--atgtgtggctagcatttctcata 401  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||| |  |||||| ||||||||| ||||||    
T  49822623 gtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttataatatgtgttgctagcattcctcata 49822695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 34437666 - 34437598
Alignment:
Q  307 cccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    ||||||| |||| |||||||| | |||| ||||||||||||||| |||||  |||||||||||||||||    
T  34437666 cccacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtttgttgaaaaatgtgtgtt 34437598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 7444437 - 7444374
Alignment:
Q  236 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    ||||||||||||||| || || |||| |||||||||||||| ||||||  ||||||||||||||    
T  7444437 ttagcaacacacattctaacaaacacttttcaacacattctctttgatgagttaaaattcacat 7444374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 34437667 - 34437746
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    ||||| ||||||| | |||||| | |||| ||||||||||||||| |||||| |||||||| || |||||| ||||||||    
T  34437667 acccatataatttggggggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtg 34437746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 306 - 385
Target Start/End: Complemental strand, 38663720 - 38663641
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    ||||| || |||| |||||||| | |||| || |||||||||||| |||||| |||||||||| ||||||| ||||||||    
T  38663720 acccatatgatttggtgggacctatgtgaattgtaaccaatcaaagagagtgtgttgaaaaatatgtgttaaaatgtgtg 38663641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 34437752 - 34437690
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    ||||||||||||||||| ||  ||| |||||||||| ||| |||||| |||||||||||||||    
T  34437752 tagcaacacacattttaacacgcacttttcaacacactctctttgattggttaaaattcacat 34437690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 401
Target Start/End: Original strand, 40669024 - 40669094
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctcata 401  Q
    |||| ||||||||||||||| |||||| ||||||||  |||||||| ||||||||  ||||||||||||||||    
T  40669024 gtgaattttaaccaatcaaagagagtgtgttgaaaa--gtgtgttaaaatgtgtgttgctagcatttctcata 40669094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 15366540 - 15366491
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||||||||||||||||||||| |||| ||| ||||| ||||||||||||    
T  15366540 ttttaaccaatcaaaaagagtgtgttggaaagtgtgtcttagaatgtgtg 15366491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 2542741 - 2542701
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtta 376  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  2542741 ttttaaccaatcaaagagagtgtgttgaaaaatgtgtgtta 2542701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 16661825 - 16661861
Alignment:
Q  263 tttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||||||| ||||||||||||||||||||||    
T  16661825 tttcaacacattctctttgatcggttaaaattcacat 16661861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 7444265 - 7444324
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattca 296  Q
    ||||||||||||||||| || |||  |||||||||||| | ||| |||||||||||||||    
T  7444265 tagcaacacacattttaacacacatttttcaacacattttctttaatcggttaaaattca 7444324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 16661859 - 16661808
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgt 382  Q
    |||| |||||||| |||||| ||| || ||||||||||||||||||||||||    
T  16661859 gtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgttagaatgt 16661808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 939489 - 939427
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||| |||||||||| |||||  ||||||||||||| | |||||| |||||||||| ||||    
T  939489 tagcaagacacattttaacatacgtatttcaacacattatctttgattggttaaaatttacat 939427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 16257624 - 16257682
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtggctagcatt 394  Q
    |||||||  |||||||| | || |||||||||||||||||| ||||||| |||||||||    
T  16257624 ttttaacatatcaaaaataatgtgttgaaaaatgtgtgttaaaatgtgttgctagcatt 16257682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 40669082 - 40669023
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcaca 298  Q
    ||||||||||||||||| ||  ||| |||||||||| ||| |||||| ||||||||||||||    
T  40669082 tagcaacacacattttaaca--cacttttcaacacactctctttgattggttaaaattcaca 40669023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 31970130 - 31970167
Alignment:
Q  263 tttcaacacattctttttgatcggttaaaattcacatt 300  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  31970130 tttcaacacactctttttgattggttaaaattcacatt 31970167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 40668997 - 40668931
Alignment:
Q  307 cccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    |||||||||||| ||| |||| | |||| ||||||||||||||| |||||| |||  ||||||||||||    
T  40668997 cccacataattttgtgagacccatgtgagttttaaccaatcaaagagagtgtgtt--aaaatgtgtgtt 40668931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 27072970 - 27072902
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc 305  Q
    |||||||||| |||||| || |||| ||||||||||||||||||||| |||||||||| ||||| ||||    
T  27072970 tagcaacacatattttaacacacacttttcaacacattctttttgattggttaaaatttacattggacc 27072902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 40175964 - 40176034
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtta 376  Q
    ||||||||||||| |||||||| | |||| ||||||||||| |||| ||||| ||| |||| |||||||||    
T  40175964 acccacataatttggtgggacccatgtgaattttaaccaattaaaaggagtgtgttaaaaagtgtgtgtta 40176034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 40566551 - 40566605
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||| |||||||||||||||||||| | |||||||||| ||||||| ||||||||    
T  40566551 gtgaattttaaccaatcaaaaagagcgtgttgaaaaatatgtgttaaaatgtgtg 40566605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 20271169 - 20271106
Alignment:
Q  236 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||||||||||| ||  ||| |||||||||| ||| ||||||  ||||||||||||||    
T  20271169 ttagcaacacacattttaacacgcacttttcaacacactctctttgattagttaaaattcacat 20271106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 21057797 - 21057734
Alignment:
Q  236 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||||||||||| ||  ||| |||||||||| ||| ||||||  ||||||||||||||    
T  21057797 ttagcaacacacattttaacacgcacttttcaacacactctctttgattagttaaaattcacat 21057734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 385
Target Start/End: Original strand, 27072893 - 27072964
Alignment:
Q  314 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    ||||| ||||| |||| || | ||||||||||||||||||| || |||||||| ||||||||| ||| ||||    
T  27072893 aatttggtgggtccaatgtaaattttaaccaatcaaaaagaatgtgttgaaaagtgtgtgttaaaatatgtg 27072964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 40566612 - 40566549
Alignment:
Q  236 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||||||||||| || | |  |||||||||  |||||||||| |||||||||||||||    
T  40566612 ttagcaacacacattttaacacatatttttcaacacgctctttttgattggttaaaattcacat 40566549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 380
Target Start/End: Original strand, 34504447 - 34504521
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaat 380  Q
    |||||||| |||| ||| |||| | | || ||||||||||||||||| |||| |||||||| ||| |||||||||    
T  34504447 acccacatgatttggtgtgacccatgcgaattttaaccaatcaaaaaaagtgtgttgaaaagtgtatgttagaat 34504521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 34504421 - 34504384
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaat 368  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  34504421 gtgaattttaaccaatcaaaaagagtgtgttgaaaaat 34504384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 3311609 - 3311661
Alignment:
Q  314 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaa 366  Q
    |||||||||| ||  | ||||||||||||| |||||| |||||||||||||||    
T  3311609 aatttagtggaactgatgtgatttttaaccgatcaaagagagtgcgttgaaaa 3311661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 34504387 - 34504423
Alignment:
Q  263 tttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||| |||||||||| |||||||||||||||    
T  34504387 tttcaacacactctttttgattggttaaaattcacat 34504423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 40694652 - 40694589
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaa--tgtgtggctagcatttct 397  Q
    ||||||||||||||| ||| || |||| ||||||||||||| ||  ||||| ||||||||||||    
T  40694652 ttttaaccaatcaaatagattgtgttgtaaaatgtgtgttaaaacgtgtgttgctagcatttct 40694589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 40696257 - 40696201
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttg 362  Q
    |||||||| |||| |||||||| | |||| ||||||| |||||||||||||| ||||    
T  40696257 acccacatgatttggtgggacccatgtgaattttaactaatcaaaaagagtgtgttg 40696201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 49106984 - 49107051
Alignment:
Q  315 atttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgt 382  Q
    |||| |||||||| | |||| ||||||||||||||| |||||| |||||||| |||||||||||||||    
T  49106984 atttggtgggacctatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttagaatgt 49107051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 396
Target Start/End: Original strand, 12275808 - 12275900
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttc 396  Q
    |||||||| |||| |||||||| |  ||| |||||||||||| || |||||| |||| ||| ||||||||||||||||||  |||||||||||    
T  12275808 acccacatgatttggtgggacccatatgaattttaaccaatcgaagagagtgtgttggaaagtgtgtgttagaatgtgtgttgctagcatttc 12275900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 400
Target Start/End: Complemental strand, 2276338 - 2276254
Alignment:
Q  314 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtggctagcatttctcat 400  Q
    ||||| |||||| | | |||| ||||||||||||||| |||||| |||||||| ||||||||||  ||||| |||| ||||||||||    
T  2276338 aatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttag--tgtgttgctaacatttctcat 2276254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 47497770 - 47497849
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    ||||||||||||| |||||||  | |||| ||||||||||||||| | | |   ||||||||||||||||||||||||||    
T  47497770 acccacataatttggtgggactcatgtgaattttaaccaatcaaagaaaatatattgaaaaatgtgtgttagaatgtgtg 47497849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 5443624 - 5443678
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||| ||||||||||||||| | |||  |||||||||||||||||||||||||||    
T  5443624 gtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtg 5443678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 5452669 - 5452723
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||| ||||||||||||||| | |||  |||||||||||||||||||||||||||    
T  5452669 gtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtg 5452723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 5443513 - 5443576
Alignment:
Q  236 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    ||||||||| ||||| || || |||| |||||||||||||| ||||| |||||| |||||||||    
T  5443513 ttagcaacatacattctaacacacacttttcaacacattctgtttgaccggttagaattcacat 5443576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 5452558 - 5452621
Alignment:
Q  236 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    ||||||||| ||||| || || |||| |||||||||||||| ||||| |||||| |||||||||    
T  5452558 ttagcaacatacattctaacacacacttttcaacacattctgtttgaccggttagaattcacat 5452621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 375
Target Start/End: Original strand, 7017158 - 7017225
Alignment:
Q  308 ccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    ||||||||||| || ||||  | |||| ||||||||||||||| ||||||  ||||||||||||||||    
T  7017158 ccacataatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgtt 7017225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 375
Target Start/End: Original strand, 7032516 - 7032583
Alignment:
Q  308 ccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    ||||||||||| || ||||  | |||| ||||||||||||||| ||||||  ||||||||||||||||    
T  7032516 ccacataatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgtt 7032583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 40134456 - 40134531
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtg 383  Q
    ||||||||||||| |||||||| | |||| ||||||||||||  | |||||| |||| ||| ||||||||| ||||||    
T  40134456 acccacataatttggtgggacccatgtgaattttaaccaatc--agagagtgtgttggaaagtgtgtgttaaaatgtg 40134531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 3235546 - 3235611
Alignment:
Q  240 caacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc 305  Q
    |||||||||||||| || |||| || ||| ||| ||| |||||| ||||||||||||||| |||||    
T  3235546 caacacacattttaacacacactttccaatacactctctttgattggttaaaattcacatgagacc 3235611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 3235693 - 3235652
Alignment:
Q  258 acacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    ||||||| ||||||| |||||||||| |||||||||||||||    
T  3235693 acacattccaacacactctttttgattggttaaaattcacat 3235652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 26647735 - 26647682
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgt 384  Q
    |||| ||||||||||| ||||||| |  ||||||||||||||||||||| ||||    
T  26647735 gtgaattttaaccaatgaaaaagactatgttgaaaaatgtgtgttagaacgtgt 26647682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 12275799 - 12275715
Alignment:
Q  314 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctc 398  Q
    ||||| ||||| || | ||||||||||||||||  || |||||| |||| |||  |||||||||||||||||  |||||||||||||    
T  12275799 aatttggtgggtcccatgtgatttttaaccaattgaagagagtgtgttggaaa--gtgtgttagaatgtgtgttgctagcatttctc 12275715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 31042124 - 31042184
Alignment:
Q  238 agcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcaca 298  Q
    ||||||||| |||||| || |||| |||||| ||||| | |||||| ||||||||||||||    
T  31042124 agcaacacatattttaacacacacttttcaatacattatctttgattggttaaaattcaca 31042184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 331 - 398
Target Start/End: Complemental strand, 35357361 - 35357292
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctc 398  Q
    |||| ||||||||||||||| |||||| |||||||||| | ||||||||||||||  |||||||||||||    
T  35357361 gtgagttttaaccaatcaaagagagtgtgttgaaaaatatttgttagaatgtgtgttgctagcatttctc 35357292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 309 - 376
Target Start/End: Original strand, 3901566 - 3901633
Alignment:
Q  309 cacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtta 376  Q
    ||||| |||| |||||||| | |||| ||||||||||||||| |||||| |||||||| |||||||||    
T  3901566 cacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 3901633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 36007511 - 36007448
Alignment:
Q  236 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||||||||||| ||| ||| |||||||||||| | |||||  |||||||||||||||    
T  36007511 ttagcaacacacattttaacattcacttttcaacacattttctttgagtggttaaaattcacat 36007448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 3300728 - 3300770
Alignment:
Q  258 acacatttcaacacattctttttgatcggttaaaattcacatt 300  Q
    |||||||| |||||||||| |||||||||||||||||||||||    
T  3300728 acacattttaacacattctctttgatcggttaaaattcacatt 3300770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 19560728 - 19560768
Alignment:
Q  335 tttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  19560728 tttttaaccaatcaaagagagtgtgttgaaaaatgtgtgtt 19560768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 26986276 - 26986339
Alignment:
Q  236 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 299  Q
    ||||||||||| |||||| |||| || ||||||||||||||  |||||  ||||||||||||||    
T  26986276 ttagcaacacatattttaacatatacttttcaacacattctccttgattagttaaaattcacat 26986339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 375
Target Start/End: Original strand, 44890437 - 44890476
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  44890437 ttttaaccaatcaaaaagagtgtgttgaaaaatgtatgtt 44890476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 51541315 - 51541394
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||||||| |||| |||||||  |  ||| ||||||||||||||||| ||||  ||||||||| |||||||||| |||||    
T  51541315 acccacatgatttggtgggactcatctgaattttaaccaatcaaaaaaagtgtattgaaaaatatgtgttagaaggtgtg 51541394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 3901565 - 3901499
Alignment:
Q  309 cacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    ||||| |||| |||||||| | |||| ||||||||||||||| ||| || |||||||||| ||||||    
T  3901565 cacatgatttggtgggacccatgtgaattttaaccaatcaaagagaatgtgttgaaaaatatgtgtt 3901499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 19158728 - 19158682
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaa 352  Q
    |||||||||||||||||||||  | |||| |||||||||||||||||    
T  19158728 acccacataatttagtgggactcatgtgaattttaaccaatcaaaaa 19158682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 1458641 - 1458686
Alignment:
Q  340 aaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||||||||| ||||||| |||||||| ||| ||||||||||||||    
T  1458641 aaccaatcaagaagagtgtgttgaaaagtgtttgttagaatgtgtg 1458686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 385
Target Start/End: Complemental strand, 32881064 - 32880987
Alignment:
Q  308 ccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||||| |||| |||||||| | |||| | ||||||||||||  |||||  ||||||||||||||| || ||||||||    
T  32881064 ccacatgattttgtgggacccatgtgaatattaaccaatcaaggagagtatgttgaaaaatgtgtgataaaatgtgtg 32880987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 3901509 - 3901545
Alignment:
Q  263 tttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||||||| |||||| |||||||||||||||    
T  3901509 tttcaacacattctctttgattggttaaaattcacat 3901545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 366
Target Start/End: Complemental strand, 29955107 - 29955047
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaa 366  Q
    |||||||| ||||  ||||||| | |||| ||||||||||||||||| |||| ||||||||    
T  29955107 acccacatgatttgatgggacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaa 29955047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 366
Target Start/End: Complemental strand, 30004261 - 30004201
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaa 366  Q
    |||||||| ||||  ||||||| | |||| ||||||||||||||||| |||| ||||||||    
T  30004261 acccacatgatttgatgggacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaa 30004201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 36480751 - 36480680
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctcat 400  Q
    |||| ||||||||||||||| |||||| |||| |||  |||||||| ||||||||  | |||||||||||||    
T  36480751 gtgaattttaaccaatcaaagagagtgtgttggaaagggtgtgttaaaatgtgtgttgttagcatttctcat 36480680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 51541289 - 51541218
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaa--tgtgtggctagcatttctcat 400  Q
    |||| ||||||||||||||||| ||||  ||||||||||| | ||||||  | ||| |||||||||||||||    
T  51541289 gtgagttttaaccaatcaaaaatagtgtattgaaaaatgtatattagaaggtttgttgctagcatttctcat 51541218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 306 - 385
Target Start/End: Complemental strand, 1473684 - 1473605
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||||||| |||| |||| ||| | |||| ||||||||||||||| | |||| |||||||||||||| ||| ||||||||    
T  1473684 acccacatgatttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgtattaaaatgtgtg 1473605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 12731654 - 12731703
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||||||||||||||||||||| |||| ||||||||||||| ||| ||||    
T  12731654 ttttaaccaatcaaaaagagtgtgttggaaaatgtgtgttataatatgtg 12731703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 400
Target Start/End: Original strand, 17389992 - 17390063
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctcat 400  Q
    |||| ||||||||||||||| |||| | |||||||| || |||||| ||||||||  |||||||||||||||    
T  17389992 gtgaattttaaccaatcaaagagagagtgttgaaaattgcgtgttaaaatgtgtgttgctagcatttctcat 17390063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 24110102 - 24110039
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttaga--atgtgtggctagcatttct 397  Q
    ||||||||||||||| |||||| |||||||||||| | |||||  |||||| ||||||||||||    
T  24110102 ttttaaccaatcaaagagagtgtgttgaaaaatgtattttagaatatgtgttgctagcatttct 24110039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 28865485 - 28865559
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctcataaat 404  Q
    |||| ||||||||||||||| |||| | |||||||| || |||||| ||||||||  |||||||||||||||||||    
T  28865485 gtgagttttaaccaatcaaagagagcgtgttgaaaa-tgcgtgttacaatgtgtgttgctagcatttctcataaat 28865559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 31946973 - 31946914
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattca 296  Q
    |||||||||||||| || || |||| ||||||||||  |||||| |||||||||||||||    
T  31946973 tagcaacacacattctaacacacacttttcaacacacacttttttatcggttaaaattca 31946914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 12731537 - 12731606
Alignment:
Q  236 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc 305  Q
    ||||||||||| ||| ||  | |||| | |||||||||||| |||||| ||||||||||||||| |||||    
T  12731537 ttagcaacacatattctaatacacacttctcaacacattctctttgattggttaaaattcacatgagacc 12731606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 31946918 - 31946967
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||||||| || |||||| ||| |||||||| ||||||||||||||||||    
T  31946918 ttttaaccgataaaaaagtgtgtgttgaaaagtgtgtgttagaatgtgtg 31946967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 3150312 - 3150352
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtta 376  Q
    ||||||||||||||||| | ||||||||||||| |||||||    
T  3150312 ttttaaccaatcaaaaaaattgcgttgaaaaatatgtgtta 3150352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 9645012 - 9645064
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtg 383  Q
    |||| ||||||||||||||||||| || |||| ||| | ||||||||||||||    
T  9645012 gtgaattttaaccaatcaaaaagattgtgttggaaagtatgtgttagaatgtg 9645064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 9651029 - 9651081
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtg 383  Q
    |||| ||||||||||||||||||| || |||| ||| | ||||||||||||||    
T  9651029 gtgaattttaaccaatcaaaaagattgtgttggaaagtatgtgttagaatgtg 9651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 42420112 - 42420186
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctcataaa 403  Q
    |||| ||||||||||||||| |||||| ||||||||  |||| ||||||||||||  |||| |||||||||||||    
T  42420112 gtgagttttaaccaatcaaatagagtgtgttgaaaagcgtgttttagaatgtgtgttgctaacatttctcataaa 42420186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 3907724 - 3907793
Alignment:
Q  306 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtt 375  Q
    |||||||| |||| |||||||| | |||| ||||||||||||||||||| || |||| |||| |||||||    
T  3907724 acccacatgatttggtgggacccatgtgaattttaaccaatcaaaaagaatgtgttggaaaaagtgtgtt 3907793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 3907715 - 3907631
Alignment:
Q  314 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctc 398  Q
    ||||| ||||| || | |||| |||||||||||||||  ||||| |||||||| ||| ||||||||||||||  |||||||||||||    
T  3907715 aatttggtgggtcccatgtgaattttaaccaatcaaa--gagtgtgttgaaaagtgtttgttagaatgtgtgttgctagcatttctc 3907631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 28907378 - 28907414
Alignment:
Q  263 tttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28907378 tttcaacacattctctttgatcggttaaaattcacat 28907414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 28943773 - 28943809
Alignment:
Q  263 tttcaacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28943773 tttcaacacattctctttgatcggttaaaattcacat 28943809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 25545279 - 25545211
Alignment:
Q  314 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgt 384  Q
    ||||||||||| |  | |||| |||||||||||||||  ||||| |||||||||||||||||| |||||||    
T  25545279 aatttagtgggtctcatgtgaattttaaccaatcaaa--gagtgtgttgaaaaatgtgtgttaaaatgtgt 25545211  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 28907412 - 28907361
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgt 382  Q
    |||| |||||||| |||||| ||| || ||||||||||||||||||||||||    
T  28907412 gtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgttagaatgt 28907361  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 28943807 - 28943756
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgt 382  Q
    |||| |||||||| |||||| ||| || ||||||||||||||||||||||||    
T  28943807 gtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgttagaatgt 28943756  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 385
Target Start/End: Complemental strand, 38029607 - 38029533
Alignment:
Q  308 ccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||||| |||| ||| |||| | |||| ||||||||||||||||   ||| |||| ||||||||||||||||||||||    
T  38029607 ccacatgatttggtgagacccatgtgaattttaaccaatcaaaa---gtgtgttggaaaatgtgtgttagaatgtgtg 38029533  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 22399814 - 22399760
Alignment:
Q  331 gtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgtgtg 385  Q
    |||| ||||| |||||||||||||||| |||||||| || || ||||||||||||    
T  22399814 gtgaattttatccaatcaaaaagagtgtgttgaaaagtgagtattagaatgtgtg 22399760  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 3907780 - 3907747
Alignment:
Q  266 caacacattctttttgatcggttaaaattcacat 299  Q
    |||||||||||||||||| |||||||||||||||    
T  3907780 caacacattctttttgattggttaaaattcacat 3907747  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 42249449 - 42249385
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaa--tgtgtggctagcatttctc 398  Q
    ||||||||||| ||||| |||| |||||||||| ||||||||||  | ||| |||||||||||||    
T  42249449 ttttaaccaattaaaaatagtgtgttgaaaaatatgtgttagaatttatgttgctagcatttctc 42249385  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 42420056 - 42420011
Alignment:
Q  336 ttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatg 381  Q
    ||||||||||| ||| ||| || |||||||||||||||||||||||    
T  42420056 ttttaaccaattaaagagaatgtgttgaaaaatgtgtgttagaatg 42420011  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 22399754 - 22399822
Alignment:
Q  237 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc 305  Q
    |||||||||||||| ||  |  ||| |||||||||| |||||||||| || |||||||||||| |||||    
T  22399754 tagcaacacacattctaatactcacttttcaacacactctttttgattggataaaattcacatgagacc 22399822  T

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Target: scaffold0137 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 8251 - 8320
Alignment:
Q  307 cccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgtta 376  Q
    |||||||||||| ||||||   | |||| ||||| ||||||||||||| ||||||||||| |||||||||    
T  8251 cccacataatttggtgggattcatgtgaattttagccaatcaaaaagaatgcgttgaaaagtgtgtgtta 8320  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 201019 - 200951
Alignment:
Q  314 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagtgcgttgaaaaatgtgtgttagaatgt 382  Q
    ||||| ||||| |||| |||| ||||||||||| || |||| || |||||||||| ||||||| |||||    
T  201019 aatttggtgggtccaatgtgaattttaaccaattaagaagaatgtgttgaaaaatatgtgttaaaatgt 200951  T

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