View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8896_low_10 (Length: 235)
Name: NF8896_low_10
Description: NF8896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8896_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 45283028 - 45283231
Alignment:
| Q |
13 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctgg |
112 |
Q |
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| T |
45283028 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctgg |
45283127 |
T |
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| Q |
113 |
aggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283128 |
aggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttct |
45283227 |
T |
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| Q |
213 |
cacc |
216 |
Q |
| |
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|||| |
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| T |
45283228 |
cacc |
45283231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 45294413 - 45294619
Alignment:
| Q |
10 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgc |
109 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
45294413 |
agcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgc |
45294512 |
T |
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| Q |
110 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttct |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
45294513 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttct |
45294612 |
T |
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| Q |
210 |
tctcacc |
216 |
Q |
| |
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||||||| |
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| T |
45294613 |
tctcacc |
45294619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 45303373 - 45303579
Alignment:
| Q |
10 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgc |
109 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
45303373 |
agcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgc |
45303472 |
T |
|
| Q |
110 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttct |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
45303473 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttct |
45303572 |
T |
|
| Q |
210 |
tctcacc |
216 |
Q |
| |
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||||||| |
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| T |
45303573 |
tctcacc |
45303579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 45274784 - 45274990
Alignment:
| Q |
10 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |
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| T |
45274784 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgc |
45274883 |
T |
|
| Q |
110 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttct |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
45274884 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttct |
45274983 |
T |
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| Q |
210 |
tctcacc |
216 |
Q |
| |
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||||||| |
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| T |
45274984 |
tctcacc |
45274990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 45271254 - 45271457
Alignment:
| Q |
13 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctgg |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| |
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| T |
45271254 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctgg |
45271353 |
T |
|
| Q |
113 |
aggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttct |
212 |
Q |
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|||||||| ||||||||||||||||||||||||||||| || || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45271354 |
aggatgtcagacaaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttct |
45271453 |
T |
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| Q |
213 |
cacc |
216 |
Q |
| |
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|||| |
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|
| T |
45271454 |
cacc |
45271457 |
T |
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