View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8896_low_3 (Length: 443)
Name: NF8896_low_3
Description: NF8896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8896_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Original strand, 39124999 - 39125408
Alignment:
| Q |
15 |
gtgttaaatgcttcttcataagagtaagattttagtaacacttatataataaatatcaaaaattcataaaagcaaaactttatttctctaacactttt-t |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39124999 |
gtgttaaatgcttcttcataagagtaagattttagtaacacttgtataataaatatcaaaaattcataaaagcaaaactttatttctctaacactttttt |
39125098 |
T |
|
| Q |
114 |
gataaataagaattagttattctaaatgtaactagtagaaaatgttaacactaagttctgatgaaagatactttgatatcaggtaagtagatattaatca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39125099 |
gataaataagaattagttattctaaatgtaactagtagaaaatgttaacactaagttctgatgaaagatacttcgatatcaggtaagtagatattaatca |
39125198 |
T |
|
| Q |
214 |
aaaaagttga-aannnnnnngaaaaagtctaatctcattatcaagaacagctctgaatttggccaattgatcagcgcaagagtttcatttatgtaaagtg |
312 |
Q |
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| T |
39125199 |
ataaagttgattttttttttgaaaacgtctaatctcattatcaagaacagctttgaatttggccaattgatcagcgcaagagtttcacttatgtaaagtg |
39125298 |
T |
|
| Q |
313 |
tgcgcaagaacaatatttcagtccctactcaagagggatcgaatgtaatcaacaatcacaacacatgggtgtgtatgtgaaactccctctttgataaatt |
412 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
39125299 |
tgcacaagaacaatatttcagtccctactcaagagggatcgaatgtaatcaacaatcacaacacatagatgtgtatgtgaaactccctctttgataaatt |
39125398 |
T |
|
| Q |
413 |
tgaccgcgga |
422 |
Q |
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| T |
39125399 |
tgaccgcgga |
39125408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 38608741 - 38608648
Alignment:
| Q |
63 |
ataaatatcaaaaattcataaaagcaaaactttatttctctaacactttttgataaataagaattagttattctaaatgtaactagtagaaaatg |
157 |
Q |
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| T |
38608741 |
ataaatatacaaaattcttaaaagtaaaactttatttcactaacactttta-ataaataagaattagttatttaaaatgtaattagtagaaaatg |
38608648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 415
Target Start/End: Complemental strand, 38608026 - 38607846
Alignment:
| Q |
234 |
aaaaagtctaatctcattatcaagaacagctctgaatttggccaattgatcagcgcaagagtttcatttatgtaaagtgtgcgcaagaacaatatttcag |
333 |
Q |
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||||| ||||||||||||||||||| ||| | |||||||||||| |||| | | ||| || |||| | || |||||| |||||||||| ||||| |
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| T |
38608026 |
aaaaaatctaatctcattatcaagagcagtttcgaatttggccaactgataaacacaaaagcttcaatctcacaaggtgtgcacaagaacaatgtttcac |
38607927 |
T |
|
| Q |
334 |
tccctactcaagagggatcgaatgtaatcaacaatcacaacacatgggtgtgtatgtgaaactccctctttgataaatttga |
415 |
Q |
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| T |
38607926 |
tccctagtcaatagg-atataatgtgatcaacaatcgcaacggataagtgggtatgcgaaactccctctttgataattttga |
38607846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 239 - 413
Target Start/End: Complemental strand, 41415756 - 41415583
Alignment:
| Q |
239 |
gtctaatctcattatcaagaacagctctgaatttggccaattgatcagcgcaagagtttcatttatgtaaagtgtgcgcaagaacaatatttcagtccct |
338 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||| ||||| | || ||||||| || | || |||| |||||| ||| || ||||||| |
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| T |
41415756 |
gtctaatctcattatcaagagcagctctaaatttggccaactgatcgacacaggagtttccttcc-gcaagatgtgaacaagaataatgttgtagtccct |
41415658 |
T |
|
| Q |
339 |
actcaagagggatcgaatgtaatcaacaatcacaacacatgggtgtgtatgtgaaactccctctttgataaattt |
413 |
Q |
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| T |
41415657 |
agtcagtagggatctaatgtaatcaacaatcacaacatatgagtgggtatgcaaaactccctctttgatgaattt |
41415583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 55334157 - 55334222
Alignment:
| Q |
348 |
ggatcgaatgtaatcaacaatcacaacacatgggtgtgtatgtgaaactccctctttgataaattt |
413 |
Q |
| |
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||||| ||||||||||| |||||||||| || ||| ||||| ||||||||||||| |||||||| |
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| T |
55334157 |
ggatctaatgtaatcaataatcacaacatataagtgagtatgcaaaactccctctttaataaattt |
55334222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 42996013 - 42995957
Alignment:
| Q |
357 |
gtaatcaacaatcacaacacatgggtgtgtatgtgaaactccctctttgataaattt |
413 |
Q |
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||||||||||||| ||||| ||||||| ||||| ||||| |||||||||| ||||| |
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| T |
42996013 |
gtaatcaacaatcgcaacatatgggtgggtatgcaaaacttcctctttgatgaattt |
42995957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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