View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8896_low_4 (Length: 335)
Name: NF8896_low_4
Description: NF8896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8896_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 43578904 - 43579211
Alignment:
| Q |
10 |
ggtgttatggcggaggaggatgagctctgtgcatttttggaggttagtgttgaggtgaagaatgaagataaggtgtatgagatattgcatcggttacggg |
109 |
Q |
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| T |
43578904 |
ggtgttatggcggaggaggatgagctctgtgcacttttggaggttagtgttgaggtgaagaatgaagataaggtgtatgagatattgcatcggttaaggg |
43579003 |
T |
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| Q |
110 |
ccgtggttaggcaggtgtctgagtcgactttgaaggttattgaggattggtttgagtcggaatatgcgatgaagattgggaagagggagtgggatgatga |
209 |
Q |
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| T |
43579004 |
ccgtggttaggcaggtgtctgagtcgactttgaaggttattgaggattggtttgagtcggaatatgcgatgaaaattgggaagagggagtgggatgatga |
43579103 |
T |
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| Q |
210 |
ggagataagagaagggtttgtgaggggaggaggtggatggcatggtcaagggtggcttggaagcggggaatggaaggttgttaagacgaatgtagatgag |
309 |
Q |
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| T |
43579104 |
ggagataagagaagggtttgtgaggggaggtggtggatggcatggtcaagggtggcttggaagcggggaatggaaggttgttaagacgaatgtagatgag |
43579203 |
T |
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| Q |
310 |
gatggaat |
317 |
Q |
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| T |
43579204 |
gatggaat |
43579211 |
T |
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