View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8896_low_5 (Length: 286)
Name: NF8896_low_5
Description: NF8896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8896_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 44267772 - 44268021
Alignment:
| Q |
11 |
cagagaaaagcagggacaaatgttcaatcctattactatccacgtaacattctttatttatttaccacctgcataacataacattgttcaaaaagagaac |
110 |
Q |
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| T |
44267772 |
cagagaaaagcagggacaaatgttcaatcctattactatccacgtaacattctttattta----ccacctgcata-----acattgttcaaaaagagaac |
44267862 |
T |
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| Q |
111 |
attataaatgtttaaattaaaattagattagaagagataaatgtgtgcaacaaaacaaaaccatacctctctgcttttcacaaagcttggacaagaagga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44267863 |
attataaatgtttaaattaaaattagattagaagagataaatgtgtgcaacaaaacaaaaccatacctctctgcttttcacaaagcttggacaagaagga |
44267962 |
T |
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| Q |
211 |
aagaaaaacgattattagaccaacaccagcaatgagtccaattagtatggctagtgtct |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44267963 |
aagaaaaacgattattagaccaacaccagcaatgagtccaattagtatggctagtgtct |
44268021 |
T |
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