View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8896_low_7 (Length: 270)
Name: NF8896_low_7
Description: NF8896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8896_low_7 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 11026615 - 11026884
Alignment:
| Q |
1 |
gaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgatgaaggggatgaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11026615 |
gaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatgaagaggaaatgaaaattcatattgatgatgaaggggatgaaa |
11026714 |
T |
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| Q |
101 |
aaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatgttggaggaaaa |
200 |
Q |
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| T |
11026715 |
aaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatgttggaggaaaa |
11026814 |
T |
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| Q |
201 |
tatagataaaactccaatgcctcccaatccttttgattcccaatctagacaacctaggaggactgatgca |
270 |
Q |
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| T |
11026815 |
tatagacaaaactccaatacctcccaatccttttgattcccaatctagacaacctaggaggactgatgca |
11026884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10993159 - 10993418
Alignment:
| Q |
1 |
gaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgatgaaggggatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||| |||| |||||||||||||||| |
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| T |
10993159 |
gaggaaaacagtagtcatgtttactatccggaatggatttataaacttatagatgatgaagaggaaatgagaattcatgttgacgatgaaggggatgaaa |
10993258 |
T |
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| Q |
101 |
aaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatgttggaggaaaa |
200 |
Q |
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| T |
10993259 |
aagttgcaaggaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccaacaatgcaaatggtggttcagatgttggagggaga |
10993358 |
T |
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| Q |
201 |
tatagataaaactccaatgcctcccaatccttttgattcccaatctagacaacctaggag |
260 |
Q |
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| |||| ||||||||||| ||||||||||| |||| ||| |||||||||||||||||||| |
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| T |
10993359 |
tgtagacaaaactccaatacctcccaatccatttgcttctcaatctagacaacctaggag |
10993418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10930955 - 10931214
Alignment:
| Q |
1 |
gaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgatgaaggggatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || |||| |||||||||||||||| |
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| T |
10930955 |
gaggaaaacagtagtcatgtttactatccggagtggatttataatcttatagatgatcaagaggaaatgagaatacaggttgacgatgaaggggatgaaa |
10931054 |
T |
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| Q |
101 |
aaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatgttggaggaaaa |
200 |
Q |
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| T |
10931055 |
aaattgcaaggaaaatggccattgtgggattatggtgcattcagtggcatgctatgcatcgaccaacaatgcaaatggtggttcagatgttggagggaga |
10931154 |
T |
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| Q |
201 |
tatagataaaactccaatgcctcccaatccttttgattcccaatctagacaacctaggag |
260 |
Q |
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| | || ||||||||||| ||||| |||||||||| ||| |||||||||||||||||||| |
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| T |
10931155 |
tgtcgacaaaactccaatacctccaaatccttttgcttctcaatctagacaacctaggag |
10931214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 11041318 - 11041576
Alignment:
| Q |
1 |
gaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgatgaaggggatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
11041318 |
gaggaaaacagtagtcatgtttactatccggagtggatttataatcttatagatgatgaagaggaaatgagaattcatgttgatgatgaaggggatgaaa |
11041417 |
T |
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| Q |
101 |
aaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatgttggaggaaaa |
200 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | |
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| T |
11041418 |
aaattgcaagaaaaatggccatcgtgggactttggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcaaatgttggagggaga |
11041517 |
T |
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| Q |
201 |
tatagataaaactccaatgcctcccaatccttttgattcccaatctagacaacctagga |
259 |
Q |
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| ||| ||||||||||| ||||| ||||| |||| ||| |||||||||| ||||||| |
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| T |
11041518 |
tgaagacaaaactccaatacctccaaatccctttgcttctcaatctagacggcctagga |
11041576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10907072 - 10907330
Alignment:
| Q |
1 |
gaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgatgaaggggatgaaa |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||| |
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| T |
10907072 |
gaggaaaacagtag-catgtttactatccggagtggattgataatcttatagatgatcaagacgaaatgagaattcatgttgatgatgaaggggatgaaa |
10907170 |
T |
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| Q |
101 |
aaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatgttggaggaaaa |
200 |
Q |
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|||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | |
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| T |
10907171 |
aaattgcaaggaaaatggcaattgtgggactctggtgcatttagtggcatgctatggatcgaccatcaatgcaaatggtggttcaaatgttggagggaga |
10907270 |
T |
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| Q |
201 |
tatagataaaactccaatgcctcccaatccttttgattcccaatctagacaacctaggag |
260 |
Q |
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| | || ||||||||||| |||||||||||||||| ||| ||||||||||| |||||||| |
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| T |
10907271 |
tgtcgacaaaactccaatacctcccaatccttttgcttctcaatctagacagcctaggag |
10907330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 9300602 - 9300649
Alignment:
| Q |
102 |
aattgcaagaaaaatggccattgtgggactatggtgcattcagtggca |
149 |
Q |
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|||||||| ||||||||| ||||||||| ||||||||||||||||||| |
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| T |
9300602 |
aattgcaaaaaaaatggcaattgtgggattatggtgcattcagtggca |
9300649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 8962828 - 8962896
Alignment:
| Q |
121 |
attgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatg |
189 |
Q |
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||||| ||||| |||||||||||||||||| | || |||||||| | ||| |||||||||| |||||| |
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| T |
8962828 |
attgtcggactttggtgcattcagtggcattcagtgcatcgaccagccatgaaaatggtggtgcagatg |
8962896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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