View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8897_low_11 (Length: 273)
Name: NF8897_low_11
Description: NF8897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8897_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 262
Target Start/End: Original strand, 31245409 - 31245652
Alignment:
| Q |
23 |
gtctagatgccccaca--cacactcacatgagaaggggagggttgaaatttgagatcaaacctaagcaccggggtaaaacgtcgtcatagcaaaccacta |
120 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31245409 |
gtctagatgccccacacacacactcacatgagaaggggagggttgaaatttgagatcaaacctaagcaccggcgtaaaacgtcgtcatagcaaaccacta |
31245508 |
T |
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| Q |
121 |
aattttaacaacaccaacataaaaatcatagatctaagaataaaacttattttcactggtacattaactctatagtctattaaaagatagatctaa--nn |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31245509 |
aattttaacaacaccaacataaaaatcatagatctaagaataaaacttattttcactggtacattaactctatagtctattaaaagatagatctaatttt |
31245608 |
T |
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| Q |
219 |
nnnnnnnnaagcaaaaagggtgcaaatggttctgcaacaccaaa |
262 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
31245609 |
ttttttttaagcaaaaagggtgcaaatggatctgcaacaccaaa |
31245652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 30417170 - 30417354
Alignment:
| Q |
23 |
gtctagatgccccacacacactcacatgagaagggg--agggttgaaatttgagatcaaacctaagcaccggggtaaaacgtcgtcatagcaaaccacta |
120 |
Q |
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||||||||||| |||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||| || || ||| || ||||||||||||||||| |
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| T |
30417170 |
gtctagatgccacacacacattcacatgataaggggcgagggttgaaatttgagaacaaacctaagcacaggcgtgaaatgttgtcatagcaaaccacta |
30417269 |
T |
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| Q |
121 |
aattttaacaacaccaacataaaaatcatagatctaagaataaaacttattttcactggtacattaactctatagtctattaaaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30417270 |
aattttaacaacaccaacataaaaatcatagatctaagaataaaacttattttcactggtacattaactctttagtctattaaaa |
30417354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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