View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8897_low_2 (Length: 472)
Name: NF8897_low_2
Description: NF8897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8897_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 8798352 - 8798096
Alignment:
| Q |
24 |
ttaatatttcgcttgtgattataaaagattaaattgtacttgtatagtaaatactaataaaataagaattgatccaagaaaaaagaatagagtgagtgag |
123 |
Q |
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| T |
8798352 |
ttaatattttgcttgtgattataaaagattaaattgtacttgtataataaatactaataaaataagaattgatctaagaaaaaagaatagagtgagtgag |
8798253 |
T |
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| Q |
124 |
gtgagggagatagagagaaggattgattccgtgccctgtgaaatgaacctatcttccccaatatattcatcatcatcagcatagtagtagtaggtaactt |
223 |
Q |
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| T |
8798252 |
gtgagggagatagagagaaggattgattccgtgccctatgaaatgaacctatcttccccaatatattcatcatcatcagcatagtagtagtaggtaactt |
8798153 |
T |
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| Q |
224 |
gttttctcctcctcgatttgatcgttcctagctcactatttattactacctctctcc |
280 |
Q |
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| T |
8798152 |
gttttctcctcctcgatttgatcgttcctagctcactatttattactacctctctcc |
8798096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 310 - 456
Target Start/End: Complemental strand, 8798066 - 8797920
Alignment:
| Q |
310 |
cttgcttgttctcttgtctctcactccactgcttttgtatggcaggggtatcagtggcagtgcagaaaaaggaaggtagagttttcattgggaaggtaaa |
409 |
Q |
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| T |
8798066 |
cttgcttgttctcttgtctctcactccactgcttttgtatggcaggggtatcagtggcagtgcagaaaaaggaaggtagagttttcattgggaaggtaaa |
8797967 |
T |
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| Q |
410 |
accnnnnnnnggcaccaatgcctcacactaacccttcttctgtaact |
456 |
Q |
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| T |
8797966 |
acctttttttggcaccaatgcttcacactaacccttcttctgtaact |
8797920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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