View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8897_low_3 (Length: 428)
Name: NF8897_low_3
Description: NF8897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8897_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 23 - 421
Target Start/End: Original strand, 28179166 - 28179562
Alignment:
| Q |
23 |
gattgatagatgaggatttattttgcatgctcaataaattctatagtgaagattagtgatgagattccactttatctattcaacagattctttactaaaa |
122 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
28179166 |
gattgatagatgagaattcattttgcatgctcaataaattctatagtgaagattagtgattagagtccactttatctactcaacagattctttattaaaa |
28179265 |
T |
|
| Q |
123 |
attagtcattattaaaagacgatgaatactttgatccccatgttacggcgatnnnnnnnncattcatctttttaaactttgttattctattattgactat |
222 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28179266 |
attagtcatgattaaaagacgatgaatactttgatccctatgttacggtgataaaaaa--cattcatctttttaaactttgttattctattattgaccat |
28179363 |
T |
|
| Q |
223 |
ttggttcatatatgctttataagtcatccgggatccaagaaatgcacataaattcaacaacattatttagttactgactcaaaaagcaaagtgaatgccc |
322 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
28179364 |
ttggttcatatatgctttataagtcatcggggatccaagaaatgcacataaattcaacaacattatttagttgctgactgaaaaagcaaagtgaatgccc |
28179463 |
T |
|
| Q |
323 |
tattgtcattgatgatttgaaacacaccgtcttaagatttgtttgtattacattaccttttcttcacaaacacttgacatgtgacaccacgaaactcga |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28179464 |
tattgtcattgatgatttgaaacacaccgtcttaagatttgtttgtattacattaccttttcttcacaaacacttgacatgtgacaccatgaaactcga |
28179562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University