View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8898_low_1 (Length: 956)
Name: NF8898_low_1
Description: NF8898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8898_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 493 - 938
Target Start/End: Original strand, 18658042 - 18658485
Alignment:
| Q |
493 |
tgcaaagataaaaaatgtaggttaatcaatcttcgtatatgttctctcaaaatcaagagacgaagtaatctaactcaacatcattcatcactcaaaaact |
592 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18658042 |
tgcaaagataaagaatgtaggttaatcaatcatcgtac--gttctctcaaaatcaagagacgaagtaatctaactcaacatcattcatcactcaaaaact |
18658139 |
T |
|
| Q |
593 |
ctttcattgctttgaagcttctcaaccacctggctcatattagacctaatatctctatcttcctctacacaatccaaagctactttagccaaaacttcca |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18658140 |
ctttcattgctttgaagcttctcaaccacctggctcatattaggcctaatatctctatcttcctctacacaatccaaagcaactttagccaaaacttcca |
18658239 |
T |
|
| Q |
693 |
tcttatttaaatcacaattggtccccattgcaggatccataatttcttcaacccaacatgtacttctctttttctctcttacccaagttatcaaccttcc |
792 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18658240 |
tcttatttaaatcacaattggtccccattgcaggatccataatttcttcaacccaacatgtactcctctttttctctcttacccaagttatcaaccttcc |
18658339 |
T |
|
| Q |
793 |
attgtatgccacttctccatcaacgtcttctatattcatcatcattggactctttccggttaccatctccaacaatacaaccccataactataaacatcc |
892 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18658340 |
attgtatgccatttctccatcaacgtcttctatattcatcatcgttggactctttccagttatcatctccaacaatacaaccccataaccataaacatcc |
18658439 |
T |
|
| Q |
893 |
actttagatgttattggtaaattgaaaatccactcaggggccatat |
938 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18658440 |
actttagatgttattggcaaattgaaaatccactcaggggccatat |
18658485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 18657522 - 18657972
Alignment:
| Q |
1 |
ttcgacccctaacatgtgtcacggtgaatacccttcaccgcgaaatggtagtaaaaatttcatatctataccaaccattttcaatatttccatgannnnn |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18657522 |
ttcgacccctaacatgtgacacggtgaataccct-caccgcgaaatggtagtaaaaatttcatatctataccaaccattttcaatatttccatgattttt |
18657620 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnnncttcataaaacaattaatttgaagttctttcgttacgaacattcaccgaaaacgatacaatcaaatggtcattcaaataaacat |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18657621 |
ttatagtttttttt---ttcataaaacaattaatttgaatttctttcgttacgaacactcaccgaaaacgatacaatcaaatggtcattcaaataaacat |
18657717 |
T |
|
| Q |
201 |
atgatataactaaccctctaaataataacgaaatcatttttcaatacttaagtagaaatgaaaactcagataagatagaatgataatattacaatcaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |
|
|
| T |
18657718 |
atgatataactaaccctctaaataataacgaaatcatttttcaatacttaagtagaaatgaaaacttagataagatagaatgattatattacaatcaaaa |
18657817 |
T |
|
| Q |
301 |
tagaagtttg-aaaattatgatcacaagaaaatcaatgattacataacatgctacaaacgcaaattctaaaggaaaatgatttgagtacatacacacaac |
399 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18657818 |
taaaagtttgaaaaattatgatcacaagaaaatcaatgattacataacatgcttcaaatgcaaattctaaagcaaaatgatttgagtacatacacacaat |
18657917 |
T |
|
| Q |
400 |
aagttgagagagaaatatacataaagataaagagaaaatg---gtgttgaatagg |
451 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
18657918 |
atgttgagagagaaatatacataaaaataaagagaaaatgatagtgttgaatagg |
18657972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 594 - 938
Target Start/End: Original strand, 21111019 - 21111363
Alignment:
| Q |
594 |
tttcattgctttgaagcttctcaaccacctggctcatattagacctaatatctctatcttcctctacacaatccaaagctactttagccaaaacttccat |
693 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| ||| |||||||| | ||||| |||||||||| |||||||| ||||| ||||||| |||||| |
|
|
| T |
21111019 |
tttcatttctttgaagcttctcaaccacctgactcatagtaggcctaatatttttatctacctctacacactccaaagcaactttcgccaaaatttccat |
21111118 |
T |
|
| Q |
694 |
cttatttaaatcacaattggtccccattgcaggatccataatttcttcaacccaacatgtacttctctttttctctcttacccaagttatcaaccttcca |
793 |
Q |
| |
|
|||| || |||||||||| || || ||| |||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21111119 |
cttacttgaatcacaattagttccaattttaggatccataatttcttccacccaacatctactcctctttttctctcttacccaatttatcaaccttcca |
21111218 |
T |
|
| Q |
794 |
ttgtatgccacttctccatcaacgtcttctatattcatcatcattggactctttccggttaccatctccaacaatacaaccccataactataaacatcca |
893 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
21111219 |
ttgtatgccacttctccatcaactccttccatattcatcattgttggactctttccggttatcatatccaacaaaacaaccccataactataaacatcca |
21111318 |
T |
|
| Q |
894 |
ctttagatgttattggtaaattgaaaatccactcaggggccatat |
938 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
21111319 |
ctttagatgttattggtgaattggaaatccattcaggggccatat |
21111363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 601 - 938
Target Start/End: Original strand, 21129986 - 21130323
Alignment:
| Q |
601 |
gctttgaagcttctcaaccacctggctcatattagacctaatatctctatcttcctctacacaatccaaagctactttagccaaaacttccatcttattt |
700 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||| ||| ||||||||| |||||||| || |||||||||||||| ||| || |||||| |||||||||| || |
|
|
| T |
21129986 |
gctttgaagcatctcaacaacctgactcatagtaggcctaatatccctatcttcttcaacacaatccaaagcaactctaaccaaaatttccatcttactt |
21130085 |
T |
|
| Q |
701 |
aaatcacaattggtccccattgcaggatccataatttcttcaacccaacatgtacttctctttttctctcttacccaagttatcaaccttccattgtatg |
800 |
Q |
| |
|
|||||| |||| |||| ||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21130086 |
aaatcataattattccctattgcaggatccaagatttgttcaacccaacatgtactcctctttttctctcttacccaagttatcaaccttccattatatg |
21130185 |
T |
|
| Q |
801 |
ccacttctccatcaacgtcttctatattcatcatcattggactctttccggttaccatctccaacaatacaaccccataactataaacatccactttaga |
900 |
Q |
| |
|
| ||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
21130186 |
tcccttctccatcaactccttctatattcatcattgttggactctttccggttatcatctctaacacgacaaccccgtaactataaacatccactttaga |
21130285 |
T |
|
| Q |
901 |
tgttattggtaaattgaaaatccactcaggggccatat |
938 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21130286 |
tgttattggtaaattgaaaatccactcaggtgccatat |
21130323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 213 - 437
Target Start/End: Original strand, 21122868 - 21123101
Alignment:
| Q |
213 |
accctctaaataataacgaaatcatttttcaatacttaagtagaaatgaaaactcagataagatagaatgataatattacaatcaagatagaagtttg-a |
311 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||||| || |||||||||| ||| |||||||||||||||||||| ||||||| | |
|
|
| T |
21122868 |
accctctaaataatgacgaaatcatctttcaatacttaagtagaaatgaaacctaagataagataaaataataatattacaatcaagataaaagtttgaa |
21122967 |
T |
|
| Q |
312 |
aaattatgatcacaagaaaatcaatgattacataa---------catgctacaaacgcaaattctaaaggaaaatgatttgagtacatacacacaacaag |
402 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| || | | ||||||| ||||| | |
|
|
| T |
21122968 |
aaattatggccaccagaaaatcaatgattacataaattacatagcatgctaaaaacaaaaattctaaaggaaaatga-ttcaatgcatacacgcaacacg |
21123066 |
T |
|
| Q |
403 |
ttgagagagaaatatacataaagataaagagaaaa |
437 |
Q |
| |
|
|| ||||||||||| ||| |||||||||||||||| |
|
|
| T |
21123067 |
ttcagagagaaataaacacaaagataaagagaaaa |
21123101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 867 - 938
Target Start/End: Original strand, 21123124 - 21123195
Alignment:
| Q |
867 |
atacaaccccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatat |
938 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
21123124 |
atacaaccccataactataaacatccactttagatgttattggtaaattggaaatccattcaggggccatat |
21123195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 875 - 938
Target Start/End: Complemental strand, 21108562 - 21108499
Alignment:
| Q |
875 |
ccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatat |
938 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
21108562 |
ccataactataaacatccaccttagatgttattggcaaattgaaaatccattcaggtgccatat |
21108499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 875 - 938
Target Start/End: Complemental strand, 21098943 - 21098880
Alignment:
| Q |
875 |
ccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatat |
938 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
21098943 |
ccatagctataaacatctactttagatgttattggcaaattgaaaatccattctggggccatat |
21098880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 21110677 - 21110740
Alignment:
| Q |
285 |
aatattacaatcaagataga-agtttgaaaattatgatcacaagaaaatcaatgattacataac |
347 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21110677 |
aatattacaatcaagataaacagtttataaattatgatcacaagaaaatcaacgattacataac |
21110740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 578 - 938
Target Start/End: Complemental strand, 39132773 - 39132413
Alignment:
| Q |
578 |
catcactcaaaaactctttcattgctttgaagcttctcaaccacctggctcatattagacctaatatctctatcttcctctacacaatccaaagctactt |
677 |
Q |
| |
|
|||||||||| || ||||| ||| |||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
39132773 |
catcactcaacaagtctttgattactttcaagcatctcaaccacctggctcatattaggcctaatatctctatcttcctctacacactccaaagcaactt |
39132674 |
T |
|
| Q |
678 |
tagccaaaacttccatcttatttaaatcacaattggtccccattgcaggatccataatttcttcaacccaacatgtacttctctttttctctcttaccca |
777 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| || | |||| |||||||||||||||||| |||||||||| ||| || ||||||||||||||||| |
|
|
| T |
39132673 |
tagccaaaatttccatcttaattaaatcacaattaatcactattgaaggatccataatttcttccacccaacatgcactcctttttttctctcttaccca |
39132574 |
T |
|
| Q |
778 |
agttatcaaccttccattgtatgccacttctccatcaacgtcttctatattcatcatcattggactctttccggttaccatctccaacaatacaacccca |
877 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||| |||| ||||||||||| ||| || ||||| |||| |||||||||||| |||| |||| |
|
|
| T |
39132573 |
agttaccaaccttccattatatgccacttctccatcaactccttcaatattcatcattgttgatctttttccagttatcatctccaacaaaacaatccca |
39132474 |
T |
|
| Q |
878 |
taactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatat |
938 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
39132473 |
taactataaacatccactttagatgttattggtaaattgaaaacccattcaggagccatat |
39132413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 9e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 594 - 778
Target Start/End: Original strand, 4329315 - 4329499
Alignment:
| Q |
594 |
tttcattgctttgaagcttctcaaccacctggctcatattagacctaatatctctatcttcctctacacaatccaaagctactttagccaaaacttccat |
693 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| ||| |||||||| | ||||| |||||||||| | |||||| ||||| ||||||| |||||| |
|
|
| T |
4329315 |
tttcatttctttgaagcttctcaaccacctgactcatagtaggcctaatatttttatctacctctacacacttcaaagcaactttggccaaaatttccat |
4329414 |
T |
|
| Q |
694 |
cttatttaaatcacaattggtccccattgcaggatccataatttcttcaacccaacatgtacttctctttttctctcttacccaa |
778 |
Q |
| |
|
|||| || |||||||||| || || || |||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
4329415 |
cttacttgaatcacaattagttccaatattaggatccataatttcttccacccaacatctactcctctttttctctcttacccaa |
4329499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 4328965 - 4329028
Alignment:
| Q |
285 |
aatattacaatcaagataga-agtttgaaaattatgatcacaagaaaatcaatgattacataac |
347 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4328965 |
aatattacaatcaagataaacagtttataaattatgatcacaagaaaatcaacgattacataac |
4329028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 837 - 936
Target Start/End: Original strand, 26675262 - 26675361
Alignment:
| Q |
837 |
ttggactctttccggttaccatctccaacaatacaaccccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccat |
936 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |||| ||||||||||||||||| || || || || ||||| || ||||||||||| ||||| ||||| |
|
|
| T |
26675262 |
ttggactctttccggtaatcatctccaacaccacaattccataactataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtgccat |
26675361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 837 - 897
Target Start/End: Original strand, 26713626 - 26713686
Alignment:
| Q |
837 |
ttggactctttccggttaccatctccaacaatacaaccccataactataaacatccacttt |
897 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
26713626 |
ttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttt |
26713686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 837 - 897
Target Start/End: Original strand, 26736862 - 26736922
Alignment:
| Q |
837 |
ttggactctttccggttaccatctccaacaatacaaccccataactataaacatccacttt |
897 |
Q |
| |
|
||||||||||||| || | ||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
26736862 |
ttggactctttcctgtaatcatctccaacaccacaactccatagctataaacatccacttt |
26736922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 837 - 897
Target Start/End: Original strand, 26743873 - 26743933
Alignment:
| Q |
837 |
ttggactctttccggttaccatctccaacaatacaaccccataactataaacatccacttt |
897 |
Q |
| |
|
|||||||||||||||| | ||||||||||| || || ||||| ||||||||||||||||| |
|
|
| T |
26743873 |
ttggactctttccggtaatcatctccaacacaacgactccatagctataaacatccacttt |
26743933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 837 - 900
Target Start/End: Original strand, 26750798 - 26750861
Alignment:
| Q |
837 |
ttggactctttccggttaccatctccaacaatacaaccccataactataaacatccactttaga |
900 |
Q |
| |
|
|||||||||||||||| | ||||||||||| || || ||||| |||||||| ||||||||||| |
|
|
| T |
26750798 |
ttggactctttccggtaatcatctccaacacaacgactccatagctataaacgtccactttaga |
26750861 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 875 - 936
Target Start/End: Original strand, 47212075 - 47212136
Alignment:
| Q |
875 |
ccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccat |
936 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
47212075 |
ccatagctataaacatcaactttagatgttattgaatgattcaaaatccactcaggtgccat |
47212136 |
T |
|
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