View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8898_low_5 (Length: 287)
Name: NF8898_low_5
Description: NF8898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8898_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 39167224 - 39167480
Alignment:
| Q |
16 |
aattcatctattgttctacaaatttagaataacactcaatcttttgaacaataaggtgcctatagagcaaccataaaaccaacatacctgtaccaatcat |
115 |
Q |
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| T |
39167224 |
aattcatctattgttctacaaatttagaataacactcaatcttttgaacaataaggtgcctatagagcaaccataaaaccaatatacctgtaccaatcat |
39167323 |
T |
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| Q |
116 |
tgagattttgtctgggacctcgtagttcatttctcaagctcattcccaccacattagtgactccattgaaaagggtggccatcttggtcagacccataag |
215 |
Q |
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| T |
39167324 |
tgagattttgtctgggacctcgtagttcatttctcaagctcattcccaccacattagtgactccattgaaaagggtggccatcttggtcagacccataag |
39167423 |
T |
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| Q |
216 |
ccagaggtctggatcaaaatattggtccccaaagaacccattgccatcggagttact |
272 |
Q |
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| T |
39167424 |
ccagaggtctggatcaaaatattggtccccaaagaacccattgccatcggagttact |
39167480 |
T |
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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 100 - 273
Target Start/End: Original strand, 37315049 - 37315222
Alignment:
| Q |
100 |
tacctgtaccaatcattgagattttgtctgggacctcgtagttcatttctcaagctcattcccaccacattagtgactccattgaaaagggtggccatct |
199 |
Q |
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||||||||||| ||||||| ||| ||| | ||||||| |||||||| ||||||||||| || |||||||||| |||||||||||||| || ||||| | |
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| T |
37315049 |
tacctgtaccagtcattgacattctgttttggacctctaagttcattcctcaagctcatgccaaccacattagacactccattgaaaagagtagccattt |
37315148 |
T |
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| Q |
200 |
tggtcagacccataagccagaggtctggatcaaaatattggtccccaaagaacccattgccatcggagttactg |
273 |
Q |
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| T |
37315149 |
tggtaagaccttggatccacagattagggtcaaaatattggtcaccaaaaaacccattgccatcagaattactg |
37315222 |
T |
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