View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_high_14 (Length: 459)
Name: NF8899_high_14
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 9e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 195 - 395
Target Start/End: Complemental strand, 2719592 - 2719392
Alignment:
| Q |
195 |
attacacatgttagtaacttatgatcaatatgacttatagataactctaaacattagtatttaatatttaaaacatgactagatcaatttataaaataac |
294 |
Q |
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|||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2719592 |
attatacatgttagtatcctatgatgaatatgacttatagataactctaaacattagtatttaatatttaaaacatgacttgatcaatttataaaataac |
2719493 |
T |
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| Q |
295 |
aatgtctaattttgttatcggggaataatgtcaaatattaaaccattacacatttttgaatccataaccatgttttatcacataaaacatagagtgcgaa |
394 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||| ||| |
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| T |
2719492 |
aatgtctaattttgttttcgatgaataatgtcaaatattaaaccattacacatttttgaattcataaccatattttttattataaaacatagagtgtgaa |
2719393 |
T |
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| Q |
395 |
t |
395 |
Q |
| |
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| |
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| T |
2719392 |
t |
2719392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 195 - 352
Target Start/End: Complemental strand, 2716498 - 2716341
Alignment:
| Q |
195 |
attacacatgttagtaacttatgatcaatatgacttatagataactctaaacattagtatttaatatttaaaacatgactagatcaatttataaaataac |
294 |
Q |
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|||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
2716498 |
attatacatgttagtatcctatgatgaatatgacttatagataactctaaacattagtatataatatttaaaacatgacttgatcaatttataaaataac |
2716399 |
T |
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| Q |
295 |
aatgtctaattttgttatcggggaataatgtcaaatattaaaccattacacatttttg |
352 |
Q |
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|||||||||| ||||| | || ||||||||| ||||||| | | |||||||||||| |
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| T |
2716398 |
aatgtctaatgttgttttaggaaaataatgtctaatattatcctaatacacatttttg |
2716341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2741277 - 2741243
Alignment:
| Q |
1 |
attttcccttggtgttaaaaataataaaataataa |
35 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
2741277 |
attttcccttgttgttaaaaataataaaataataa |
2741243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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