View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_high_21 (Length: 389)
Name: NF8899_high_21
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 2271770 - 2272115
Alignment:
| Q |
9 |
agtttggtgttaataaatttcatgagtacgtgaaatgaattcaatgctgaaatttaagatgaatattgttcttctacagaggggattttacaccaactaa |
108 |
Q |
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| T |
2271770 |
agtttgatgttaataaatttcatgagtacgtgaaatgaattcaatgctgaaatttaagatgaatattgttcttctacagaggggattttacaccaactaa |
2271869 |
T |
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| Q |
109 |
aatgttcataattaaagtagttacaatgttggtgtaatgtggtaagtaatgacttattatctcaagtttagaatcggtgcaaaaataatgtggtatgtaa |
208 |
Q |
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| T |
2271870 |
aatgttcataattaaagtagttacaatgttggtgtaatgtggtaagtaatgacttattatctcaagtttagaatcggtgcaaaaataatgtggtatgtaa |
2271969 |
T |
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| Q |
209 |
tgcttttgtatttactggcttcctgcgtttctggtttgattttatgggatgagggctgcttcctggtgttctcggtcgtctatgattttttgcaaactag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2271970 |
tgcttttgtatttactggcttcctgcgtttctggtttgattttatgggatgagggctgcttcctggtgttctcggtcgtctatgattttttgcaaactag |
2272069 |
T |
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| Q |
309 |
ttttgggcttatttttgctccctgaagccaattgtcctgcaattct |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272070 |
ttttgggcttatttttgctccctgaagccaattgtcctgcaattct |
2272115 |
T |
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