View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_high_26 (Length: 353)
Name: NF8899_high_26
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 57 - 302
Target Start/End: Complemental strand, 28977070 - 28976822
Alignment:
| Q |
57 |
gacatatctacacttttggttgaaattatgtacgtttttgtcttcatgtaacatattaaatcctctattttcaaaattaagtaaatatagtatatatgtc |
156 |
Q |
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| T |
28977070 |
gacatatctacacttttggttgaaattatgtacgtttttgtcttcatgtaacatattaaatcctctattttcaaaattaagtaaatatagtatatatgtc |
28976971 |
T |
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| Q |
157 |
attttctttcacttaaactcttcaaagtctctttatgttttcctt---nnnnnnnntatctctannnnnnngtgtgtgaaatgtttggagtttgagtata |
253 |
Q |
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| T |
28976970 |
attttctttcacttaaactcttcaaagtctctttatgttttccttaaaaaaaaaaaaatctctatttttttgtgtgtgaaatgtttggagtttgagtata |
28976871 |
T |
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| Q |
254 |
gttttgaaagtttgaatattataatgtagaccgactaatttatcttcct |
302 |
Q |
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| T |
28976870 |
gttttgaaagtttgaatattataatgtaggtcgactaatttatcttcct |
28976822 |
T |
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