View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_high_27 (Length: 333)
Name: NF8899_high_27
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 49289807 - 49290103
Alignment:
| Q |
18 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289807 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
49289906 |
T |
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| Q |
118 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289907 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
49290006 |
T |
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| Q |
218 |
ggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290007 |
ggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaat |
49290103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 49296758 - 49297054
Alignment:
| Q |
18 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296758 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
49296857 |
T |
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| Q |
118 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
217 |
Q |
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| T |
49296858 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
49296957 |
T |
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| Q |
218 |
ggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaat |
314 |
Q |
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| T |
49296958 |
ggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaat |
49297054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 49303488 - 49303784
Alignment:
| Q |
18 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303488 |
agatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagc |
49303587 |
T |
|
| Q |
118 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303588 |
agtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggt |
49303687 |
T |
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| Q |
218 |
ggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303688 |
ggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaat |
49303784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 264
Target Start/End: Complemental strand, 6568113 - 6567878
Alignment:
| Q |
26 |
tcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatg |
125 |
Q |
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||||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| ||| |
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| T |
6568113 |
tcagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatg |
6568014 |
T |
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| Q |
126 |
aacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagct |
225 |
Q |
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||||||||||||| |||||||||| ||||||||||||| ||| ||| || || | | || ||||| || |||| ||||||||||||||||| |
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| T |
6568013 |
aacttgatgagatgagtggagggagagacattgaacaagcac---ttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagct |
6567917 |
T |
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| Q |
226 |
tgttggtggagccaatcaagttatgagtcttcatcttaa |
264 |
Q |
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|||||||||||| ||| |||||||||| ||||| ||||| |
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| T |
6567916 |
tgttggtggagctaatgaagttatgagccttcaccttaa |
6567878 |
T |
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