View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8899_high_28 (Length: 330)
Name: NF8899_high_28
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_high_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 3573086 - 3572781
Alignment:
| Q |
9 |
ggtggtcagcaagattctctataggtccttttccggttacaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3573086 |
ggtggtcagcaagattctctataggtccttttccggttacaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttc |
3572987 |
T |
|
| Q |
109 |
tttcacctttaactctgcaaaagcctctgggtcgtcagctaggcctaatgggtcaaagcttccacctggatagagtggatcgactacctcaccaagaggt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||| |||||||| |||||| |
|
|
| T |
3572986 |
tttcacctttaactctgcaaaagcctctgggtcatcagctaggcctaatgggtcaaaactaccacctgggtagagtgggtcgacaacctcaccgagaggt |
3572887 |
T |
|
| Q |
209 |
ccaccggcaatacggtaaccctcgacagctcccattaagataacttggacagcccatatagcaaggatgctttgtgcgtggactaggcttgggttaccca |
308 |
Q |
| |
|
||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||| |
|
|
| T |
3572886 |
ccacctgcaatacgataaccctcaacagcacccattaagataacttggacagcccatatagcaaggatgctttgtgcatggactagacttggatttccca |
3572787 |
T |
|
| Q |
309 |
agtagt |
314 |
Q |
| |
|
|||||| |
|
|
| T |
3572786 |
agtagt |
3572781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 3576368 - 3576065
Alignment:
| Q |
11 |
tggtcagcaagattctctataggtccttttccggttacaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttctt |
110 |
Q |
| |
|
||||| ||||| ||||||| |||||| |||||||||||||| || ||||| |||||||||||||| || |||||||||| ||| ||||| || ||||||| |
|
|
| T |
3576368 |
tggtcggcaaggttctctagaggtccctttccggttacaatggcctgaacgaagaatccaaacatagagaacatagctagcctaccattcttaagttctt |
3576269 |
T |
|
| Q |
111 |
tcacctttaactctgcaaaagcctctgggtcgtcagctaggcctaatgggtcaaagcttccacctggatagagtggatcgactacctcaccaagaggtcc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
3576268 |
tcacctttaactctgcaaaagcctctgggtcgtcagcgaggcccaatgggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtcc |
3576169 |
T |
|
| Q |
211 |
accggcaatacggtaaccctcgacagctcccattaagataacttggacagcccatatagcaaggatgctttgtgcgtggactaggcttgggttacccaag |
310 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3576168 |
accggcaatacggtaaccctcaacagctcccattaagataacttggacagcccatatagcaaggatactttgtgcgtggactaggcttgggttacccaag |
3576069 |
T |
|
| Q |
311 |
tagt |
314 |
Q |
| |
|
|||| |
|
|
| T |
3576068 |
tagt |
3576065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 3584849 - 3585153
Alignment:
| Q |
10 |
gtggtcagcaagattctctataggtccttttccggttacaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttct |
109 |
Q |
| |
|
|||||||||||| || | || |||||| |||||||| || || ||||||||||||||||||||||| || ||||| |||||||| ||||| ||||||||| |
|
|
| T |
3584849 |
gtggtcagcaaggttttttaaaggtccctttccggtcacgatggcttgaacaaagaatccaaacatagagaacatcgctaacctaccattcttgagttct |
3584948 |
T |
|
| Q |
110 |
ttcacctttaactctgcaaaagcctctgggtcgtcagctaggcctaatgggtcaaagcttccacctggatagagtggatcgactacctcaccaagaggtc |
209 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3584949 |
ttaacctttaactctgcaaaagcctcggggtcctcagcaaggcccaatgggtcaaagcttccacctggatagagtgggtcgactacctcaccaagaggtc |
3585048 |
T |
|
| Q |
210 |
caccggcaatacggtaaccctcgacagctcccattaagataacttggacagcccatatagcaaggatgctttgtgcgtggactaggcttgggttacccaa |
309 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3585049 |
caccggcaatacggtaaccttcaacagctcccattaagataacttggacagcccaaatagcaaggatgctttgtgcatggactaggcttgggttacccaa |
3585148 |
T |
|
| Q |
310 |
gtagt |
314 |
Q |
| |
|
||||| |
|
|
| T |
3585149 |
gtagt |
3585153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 314
Target Start/End: Complemental strand, 3578225 - 3577921
Alignment:
| Q |
10 |
gtggtcagcaagattctctataggtccttttccggttacaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttct |
109 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||| |||||||||| || ||||| || ||||||||||| || |||||||||||||| ||||| ||||||||| |
|
|
| T |
3578225 |
gtggtcagcaaggttctctagtggtcccttttcggttacaatggcctgaacgaaaaatccaaacatcgagaacatagctaacctgccattcttgagttct |
3578126 |
T |
|
| Q |
110 |
ttcacctttaactctgcaaaagcctctgggtcgtcagctaggcctaatgggtcaaagcttccacctggatagagtggatcgactacctcaccaagaggtc |
209 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
3578125 |
ttaacctttaactctgcaaaagcctctgggtcgtctgcgaggcccaatgggtcaaagcttccaccggggtagagtggatcgactacctcaccaagaggtc |
3578026 |
T |
|
| Q |
210 |
caccggcaatacggtaaccctcgacagctcccattaagataacttggacagcccatatagcaaggatgctttgtgcgtggactaggcttgggttacccaa |
309 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||| || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3578025 |
catcggcaatacggtaaccctcaacagctcccattaagatagctaggacaacccaaatagcaaggatgctttgtgcgtggactaggcttgggttacccaa |
3577926 |
T |
|
| Q |
310 |
gtagt |
314 |
Q |
| |
|
||||| |
|
|
| T |
3577925 |
gtagt |
3577921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 3570039 - 3569734
Alignment:
| Q |
9 |
ggtggtcagcaagattctctataggtccttttccggttacaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttc |
108 |
Q |
| |
|
|||||||||| || ||||| |||||||| |||||||| ||||| || ||||| |||||||||||||| || |||||||||||||| |||||||| ||||| |
|
|
| T |
3570039 |
ggtggtcagcgaggttctcaataggtccctttccggtgacaatggcctgaacgaagaatccaaacatagagaacatagctaacctaccattttttagttc |
3569940 |
T |
|
| Q |
109 |
tttcacctttaactctgcaaaagcctctgggtcgtcagctaggcctaatgggtcaaagcttccacctggatagagtggatcgactacctcaccaagaggt |
208 |
Q |
| |
|
||||||||| ||||||||||||||||| || || || || ||||| || ||||||||||| |||||||| |||||||||||||||||||| || |||||| |
|
|
| T |
3569939 |
tttcaccttcaactctgcaaaagcctcgggatcttcggcaaggcccaaggggtcaaagctgccacctgggtagagtggatcgactacctcgcctagaggt |
3569840 |
T |
|
| Q |
209 |
ccaccggcaatacggtaaccctcgacagctcccattaagataacttggacagcccatatagcaaggatgctttgtgcgtggactaggcttgggttaccca |
308 |
Q |
| |
|
||||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
3569839 |
ccaccagcaatacggtaaccctccacggcgcccattaagataacttggactgcccatatagcaaggatgctttgtgcatggactagacttgggttaccca |
3569740 |
T |
|
| Q |
309 |
agtagt |
314 |
Q |
| |
|
|||||| |
|
|
| T |
3569739 |
agtagt |
3569734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 3564391 - 3564086
Alignment:
| Q |
9 |
ggtggtcagcaagattctctataggtccttttccggttacaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttc |
108 |
Q |
| |
|
||||||| || || ||||| |||||||| ||||| || ||||| |||||||| || ||||||||||| || |||||||||||||| |||||||| ||||| |
|
|
| T |
3564391 |
ggtggtcggcgaggttctcgataggtccctttccagtcacaatggcttgaacgaaaaatccaaacatagagaacatagctaacctaccattttttagttc |
3564292 |
T |
|
| Q |
109 |
tttcacctttaactctgcaaaagcctctgggtcgtcagctaggcctaatgggtcaaagcttccacctggatagagtggatcgactacctcaccaagaggt |
208 |
Q |
| |
|
||||||||| ||||||||||||||||| || || || || ||||| || ||||||||||| |||||||| |||||||| || || |||||||| |||||| |
|
|
| T |
3564291 |
tttcaccttcaactctgcaaaagcctcgggatcttcggcaaggcccaaggggtcaaagctgccacctgggtagagtgggtcaaccacctcaccgagaggt |
3564192 |
T |
|
| Q |
209 |
ccaccggcaatacggtaaccctcgacagctcccattaagataacttggacagcccatatagcaaggatgctttgtgcgtggactaggcttgggttaccca |
308 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
3564191 |
ccaccagcaatacggtaaccctcaacagcacccattaagataacttggacagcccatatagcaaggatgctttgtgcatggactagacttgggttaccca |
3564092 |
T |
|
| Q |
309 |
agtagt |
314 |
Q |
| |
|
|||||| |
|
|
| T |
3564091 |
agtagt |
3564086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 13276317 - 13276012
Alignment:
| Q |
9 |
ggtggtcagcaagattctctataggtccttttccggttacaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttc |
108 |
Q |
| |
|
||||||||||||| || || | |||||| |||||||| ||||| |||||||| |||||||||||||| |||||||| |||||||| ||||| || | || |
|
|
| T |
13276317 |
ggtggtcagcaaggttttccaaaggtccctttccggtcacaatggcttgaacgaagaatccaaacatagaaaacatggctaacctaccattcttaatctc |
13276218 |
T |
|
| Q |
109 |
tttcacctttaactctgcaaaagcctctgggtcgtcagctaggcctaatgggtcaaagcttccacctggatagagtggatcgactacctcaccaagaggt |
208 |
Q |
| |
|
|||||| || |||||| ||||||| |||||||| || || || || |||||||| ||||| |||||||| |||||||| || | ||||||||||||||| |
|
|
| T |
13276217 |
tttcactttcaactctacaaaagcttctgggtcatcggcgagacccaatgggtcgaagctaccacctgggtagagtgggtcaatcacctcaccaagaggt |
13276118 |
T |
|
| Q |
209 |
ccaccggcaatacggtaaccctcgacagctcccattaagataacttggacagcccatatagcaaggatgctttgtgcgtggactaggcttgggttaccca |
308 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| |||||||||||| |||||||| ||||||||||||||||| || || || |||||||| |||| |
|
|
| T |
13276117 |
ccaccagcaatacggtaaccctcaacagcacccatcaagataacttggcaggcccatatggcaaggatgctttgtgcatgtacaagacttgggttgccca |
13276018 |
T |
|
| Q |
309 |
agtagt |
314 |
Q |
| |
|
| |||| |
|
|
| T |
13276017 |
aatagt |
13276012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 38357398 - 38357101
Alignment:
| Q |
17 |
gcaagattctctataggtccttttccggttacaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttctttcacct |
116 |
Q |
| |
|
||||| ||||| | |||||| |||||||| |||||||| |||||||||||||| ||||| || ||||| ||||| || || || |||||||| || |||| |
|
|
| T |
38357398 |
gcaaggttctccaaaggtccctttccggtcacaatagcctgaacaaagaatccgaacatagagaacatggctaatctaccgttcttgagttccttaacct |
38357299 |
T |
|
| Q |
117 |
ttaactctgcaaaagcctctgggtcgtcagctaggcctaatgggtcaaagcttccacctggatagagtggatcgactacctcaccaagaggtccaccggc |
216 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||| || ||||| || || |||||||||||||| ||||| || |
|
|
| T |
38357298 |
tcaactctgcgaaagcctctgggtcgtcagctaggcccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagc |
38357199 |
T |
|
| Q |
217 |
aatacggtaaccctcgacagctcccattaagataacttggacagcccatatagcaaggatgctttgtgcgtggactaggcttgggttacccaagtagt |
314 |
Q |
| |
|
|||||||||||| || ||||| ||||| |||||||||||| |||||| || ||||| ||||| || || ||||| | ||||||||||||||||||| |
|
|
| T |
38357198 |
aatacggtaaccttcaacagcgcccatcaagataacttgggtagcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagt |
38357101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 33992644 - 33992739
Alignment:
| Q |
19 |
aagattctctataggtccttttccggttacaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttctttcac |
114 |
Q |
| |
|
||||||||| | ||||||||| || || |||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||| ||| ||||| |
|
|
| T |
33992644 |
aagattctccaaaggtcctttaccagtaacaatagcttgaacaaagaaaccaaacattgaaaacatagccaatcttccatttttgatttccttcac |
33992739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 42603165 - 42603065
Alignment:
| Q |
47 |
acaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttctttcacctttaactctgcaaaagcctctgggtcgtcag |
146 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||||| || | || || |||||||| || ||||| |||||||| || || || ||||| |||| |
|
|
| T |
42603165 |
acaatggcttgaacaaagaaaccaaacatggagaacatagccaatcggccgttcttgagttccttgaccttcaactctgcgaatgcatcggggtcatcag |
42603066 |
T |
|
| Q |
147 |
c |
147 |
Q |
| |
|
| |
|
|
| T |
42603065 |
c |
42603065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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