View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_high_40 (Length: 256)
Name: NF8899_high_40
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_high_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 37629091 - 37629346
Alignment:
| Q |
1 |
ccacaaataagttatttacataataccaaatgatgacttcggtaccaacattatgtcgctctcttgagtgaaattgtactcggatctattaaacaaatta |
100 |
Q |
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| T |
37629091 |
ccacaaataagttatttacataataccaaatgatgacttcggtaccaacattatgtcgctctc-tgagtgaaattgtactcggatctattaaacaaatta |
37629189 |
T |
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| Q |
101 |
aggtcctgagtttgagtcttgtgaacag-nnnnnnnntgtggatgagtgtttcacatgtatgatctgttaacnnnnnnnnntgatgattacaatttattg |
199 |
Q |
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| T |
37629190 |
aggtcttgagtttgagtcttgtgaacggaaaaaaaaatgtggatgagtgtttcacatctatgatctgttaacaaaaaaaaatgatgattacaatttattg |
37629289 |
T |
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| Q |
200 |
agattctaaattattcaagacaatgatgcaggaaatcaatgaaggaatttgctttga |
256 |
Q |
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| T |
37629290 |
agattctaaattattcaagacaatgatgcaggaaatcaatgaaggaatttgctttga |
37629346 |
T |
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