View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_101 (Length: 238)
Name: NF8899_low_101
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_101 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 52862953 - 52863177
Alignment:
| Q |
1 |
taggcaaagttaagcatagaaacttaacagttttacgtggatattatgcaggaccaccacctgatgtaagactattagtttatgattacatgccaaatgg |
100 |
Q |
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| T |
52862953 |
taggcaaagttaagcatagaaacttaacagttttacgtggatattatgcaggaccaccacctgatgtaagactattagtttatgattacatgccaaatgg |
52863052 |
T |
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| Q |
101 |
aaatttaggtacattgcttcaagaagcttcacaacaagatggtcatgttttgaattggccaatgcgtcatttgattgcattaggtattgctcgtggcttg |
200 |
Q |
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| T |
52863053 |
aaatttaggtacattgcttcaagaagcttcacaacaagatggtcatgttttgaattggccaatgcgtcatttgattgcattaggtattgctcgtggcttg |
52863152 |
T |
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| Q |
201 |
ggttatttacactcggtggaaattg |
225 |
Q |
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| T |
52863153 |
ggttatttacactcggtggaaattg |
52863177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 8414171 - 8414215
Alignment:
| Q |
120 |
caagaagcttcacaacaagatggtcatgttttgaattggccaatg |
164 |
Q |
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| T |
8414171 |
caagaagcttctcaccaagatggtcatgttctaaattggccaatg |
8414215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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