View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_11 (Length: 629)
Name: NF8899_low_11
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 15 - 629
Target Start/End: Complemental strand, 45976273 - 45975656
Alignment:
| Q |
15 |
cctgtgcatagttactaacgtccttgtgcgactaataaaatagaaaatttggtatgataattgatatgctactagcaggcatattaattatctacacaca |
114 |
Q |
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| T |
45976273 |
cctgtgcatagttactaacgtccttgtgcgactaataaaatagaaaatttggtatgataattgatatgctactagcaggcatatcaattatctacacaca |
45976174 |
T |
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| Q |
115 |
ccacaaagctatctcagtaaattaacacaccaatacagtacaatacttaaaccttgaagagaatcgctcgatgcctacaaagaccagaagatagaccacc |
214 |
Q |
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| T |
45976173 |
ccacaaagctatctcagtaaattaacacaccaatacagtacaatacttaaaccttgaagagaatcgctcgatgcctacaaagaccagaagatagaccacc |
45976074 |
T |
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| Q |
215 |
aatgggaagtacaacacacttgtgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatatacccctt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45976073 |
aatgggaagtacaacacacttgtgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatatacccctt |
45975974 |
T |
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| Q |
315 |
caataatatacacactcagaatagcaacaacataataaggaaaaaagt---gattatattgaagaatactactatatataccccatatttatggcaacaa |
411 |
Q |
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| T |
45975973 |
caataatatacacactcagaatagcaacaacataataaggaaaaaagtgaagattatattgaagaatactactatatataccccatatttatggcaacaa |
45975874 |
T |
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| Q |
412 |
gttttcccagttgttcaacaaacaccaaggtgttctccgaagaacgatacaactcctgagctttatcatgaagtagcttcaagcgagaatcttcttgcct |
511 |
Q |
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| T |
45975873 |
gttttcccagttgttcaacaaacaccaaggtgttctctgaagaacgatacaactcctgagctttatcatgaagtagcttcaagcgagaatcttcttgcct |
45975774 |
T |
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| Q |
512 |
atcgacaagcaccacctccatagatgcctcgcttggttcaacggctttaagtgccatcaaagtgggtatcttcttaccttcttcctcgtcattgcacatc |
611 |
Q |
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| T |
45975773 |
atcgacaagcaccacctccatagatgcctcgcttggttcaacggctttaagtgccatcaaagtgggtatcttcttaccttcttcctcgtcattgcacatc |
45975674 |
T |
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| Q |
612 |
acccacagatacggattc |
629 |
Q |
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| T |
45975673 |
acccacagatacggattc |
45975656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 304
Target Start/End: Original strand, 28052311 - 28052450
Alignment:
| Q |
165 |
accttgaagagaatcgctcgatgcctacaaagaccagaagatagaccaccaatgggaagtacaacacacttgtgaaaattcctcaacctcttactaacca |
264 |
Q |
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| T |
28052311 |
accttgaagagaattgcgcgatgcctacagagtcccgtggacaaattaccaactggaagcacaacacactgatgaaaattcctcaaccgcttactaacca |
28052410 |
T |
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| Q |
265 |
acttccactgtttgtggagatctcctcgctccaccgggaa |
304 |
Q |
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| T |
28052411 |
tcttccaccttttttgcagatctccttgctccacagggaa |
28052450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 486
Target Start/End: Original strand, 28052682 - 28052763
Alignment:
| Q |
405 |
gcaacaagttttcccagttgttcaacaaacaccaaggtgttctccgaagaacgatacaactcctgagctttatcatgaagta |
486 |
Q |
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| T |
28052682 |
gcaacaagttttccaagcttttcaacgagcaccaaggcattctcagaagcagaatacaactcttgagctttatcttgaagta |
28052763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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