View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_13 (Length: 612)
Name: NF8899_low_13
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_13 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: scaffold0212 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 1 - 610
Target Start/End: Complemental strand, 12479 - 11870
Alignment:
| Q |
1 |
ttcgcgagacataggcacaagcagtctaataagagtctgcggactccttagacaagagcataagcatagatcaggccatttcccaccacctcacgagccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12479 |
ttcgcgagacataggcacaagcagtctaataagagtctgcggactccttagacaagagcataagcatagatcaggccatttcccaccacctcacgagccc |
12380 |
T |
|
| Q |
101 |
aagtaaacgaaagtgtatgtgcactagcgggtgcggaaagcaagatattctcattatagccatatcccttatgaagggttttaggagagccataggggcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12379 |
aagtaaacgaaagtgtatgtgcactagcgggtgcggaaagcaagatattctcattatagccatatcccttatgaagggttttaggagagccataggggcc |
12280 |
T |
|
| Q |
201 |
tatacaagtttccattaagaaaaaatctccgataccactttgatagatccatcaacaaacataaaatagaaagatgcacaagcttctttccctatcctat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12279 |
tatacaagtttccattaagaaaaaatctccgataccactttgatagatccatcaacaaacataaaatagaaagatgcacaagcttctttccctatcctat |
12180 |
T |
|
| Q |
301 |
catggactgaattccgggtgggtttctttaactcatcgcgatttcaaataaaatattccgggtttcataccaatgctcgaagcagctcctctatccgcgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12179 |
catggactgaattccgggtgggtttctttaactcatcgcgatttcaaataaaatattccgggtttcataccaatgctcgaagcagctcctctatccgcgg |
12080 |
T |
|
| Q |
401 |
aactacaactaaacctggagcttatctggttaccttaataatcatggacaaaatctggtctgtatccaggcagtcggttttgattgctaactcacgaccg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12079 |
aactacaactaaacctggagcttatctggttaccttaataatcatggacaaaatctggtctgtatccaggcagtcggttttgattgctaactcacgaccg |
11980 |
T |
|
| Q |
501 |
gaacccgtttggctggtctttctctcgcctaagttgaagcgagaaaggtgtagaggaatctaagcccattaagagaggctttctgagatcgagatgtgtg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11979 |
gaacccgtttggctggtctttctctcgcctaagttgaagcgagaaaggtgtagaggaatctaagcccattaagagaggctttctgagatcgagatgtgtg |
11880 |
T |
|
| Q |
601 |
ctcatctctg |
610 |
Q |
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|||||||||| |
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| T |
11879 |
ctcatctctg |
11870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 402 - 610
Target Start/End: Original strand, 9628815 - 9629023
Alignment:
| Q |
402 |
actacaactaaacctggagcttatctggttaccttaataatcatggacaaaatctggtctgtatccaggcagtcggttttgattgctaactcacgaccgg |
501 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||| |
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| T |
9628815 |
actacaactaaacctggagcttatctagttaccttaataatcatggacaaaatctgctctatatctaggcagtcggttttgattgctaactcatgaccgg |
9628914 |
T |
|
| Q |
502 |
aacccgtttggctggtctttctctcgcctaagttgaagcgagaaaggtgtagaggaatctaagcccattaagagaggctttctgagatcgagatgtgtgc |
601 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9628915 |
aacccgtttggctggtctttctctcgcctaagttgtagcgagaaaggtgtagaggaatctaagcccattaagagaggcttgttgagatcgagatgtgtgc |
9629014 |
T |
|
| Q |
602 |
tcatctctg |
610 |
Q |
| |
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||||||||| |
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| T |
9629015 |
tcatctctg |
9629023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 242 - 441
Target Start/End: Complemental strand, 16577067 - 16576868
Alignment:
| Q |
242 |
gatagatccatcaacaaacataaaatagaaagatgcacaagcttctttccctatcctatcatggactgaattccgggtgggtttctttaactcatcgcga |
341 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||| |
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| T |
16577067 |
gatagatccatcatcaattgtaaaatagaaagatgcacaagcttctttccctatcctatcatggactgaatttcgggttgatttctttaactcatcacga |
16576968 |
T |
|
| Q |
342 |
tttcaaataaaatattccgggtttcataccaatgctcgaagcagctcctctatccgcggaactacaactaaacctggagcttatctggttaccttaataa |
441 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||||||| | |||||||||| |
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| T |
16576967 |
tttcaaataaaatatttcgggtttcataccaatactcgaagcaactcctctatccacgaaactacaactaaacctggagcttatctgataaccttaataa |
16576868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 507 - 602
Target Start/End: Original strand, 28039254 - 28039349
Alignment:
| Q |
507 |
gtttggctggtctttctctcgcctaagttgaagcgagaaaggtgtagaggaatctaagcccattaagagaggctttctgagatcgagatgtgtgct |
602 |
Q |
| |
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|||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| || | ||||||||||||||||| |
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| T |
28039254 |
gtttggttggtatttctcgcgcctaagttgaagcaagaaaggtgtagaggaatctaagcccgttaaaagaggcattataagatcgagatgtgtgct |
28039349 |
T |
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