View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8899_low_14 (Length: 561)

Name: NF8899_low_14
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8899_low_14
NF8899_low_14
[»] scaffold0035 (3 HSPs)
scaffold0035 (435-527)||(80167-80259)
scaffold0035 (380-424)||(84079-84123)
scaffold0035 (288-339)||(84054-84105)
[»] chr8 (32 HSPs)
chr8 (435-527)||(1656252-1656344)
chr8 (435-527)||(6334191-6334283)
chr8 (435-527)||(6337891-6337983)
chr8 (435-527)||(36797804-36797896)
chr8 (435-527)||(14033420-14033512)
chr8 (435-527)||(24516865-24516957)
chr8 (435-527)||(36803901-36803993)
chr8 (435-527)||(417450-417543)
chr8 (435-527)||(12877054-12877146)
chr8 (435-527)||(14029710-14029801)
chr8 (435-527)||(23712687-23712778)
chr8 (440-527)||(1659902-1659988)
chr8 (440-527)||(413513-413597)
chr8 (451-527)||(12880581-12880657)
chr8 (470-527)||(37404553-37404610)
chr8 (435-527)||(27276718-27276812)
chr8 (435-480)||(24512923-24512968)
chr8 (288-339)||(417366-417417)
chr8 (288-339)||(14029841-14029892)
chr8 (288-339)||(24516782-24516833)
chr8 (288-339)||(36803814-36803865)
chr8 (456-527)||(27243344-27243419)
chr8 (456-527)||(27254919-27254994)
chr8 (288-339)||(12877182-12877233)
chr8 (380-416)||(417391-417427)
chr8 (380-416)||(6337831-6337867)
chr8 (380-416)||(12877172-12877208)
chr8 (380-416)||(14029831-14029867)
chr8 (380-416)||(24516807-24516843)
chr8 (380-416)||(36803839-36803875)
chr8 (288-339)||(6337806-6337857)
chr8 (380-422)||(37404509-37404551)
[»] chr5 (20 HSPs)
chr5 (435-527)||(31173923-31174015)
chr5 (435-527)||(27261509-27261601)
chr5 (435-527)||(28396313-28396405)
chr5 (435-527)||(31170237-31170329)
chr5 (435-527)||(28392421-28392513)
chr5 (435-527)||(41873409-41873502)
chr5 (435-527)||(41882131-41882223)
chr5 (459-527)||(27265537-27265604)
chr5 (454-527)||(20893000-20893073)
chr5 (454-527)||(20914470-20914543)
chr5 (380-431)||(27265446-27265497)
chr5 (288-339)||(27261650-27261701)
chr5 (288-339)||(31170366-31170417)
chr5 (448-502)||(24090378-24090432)
chr5 (380-416)||(31170356-31170392)
chr5 (380-416)||(41873537-41873573)
chr5 (288-339)||(27265421-27265472)
chr5 (493-527)||(24089479-24089513)
chr5 (380-416)||(27261640-27261676)
chr5 (288-328)||(41873547-41873587)
[»] chr3 (12 HSPs)
chr3 (435-527)||(44185276-44185368)
chr3 (439-527)||(3808809-3808897)
chr3 (435-527)||(37982171-37982262)
chr3 (449-527)||(3805319-3805397)
chr3 (452-527)||(37974938-37975014)
chr3 (467-527)||(44174811-44174870)
chr3 (467-527)||(44181511-44181570)
chr3 (487-527)||(44174671-44174711)
chr3 (487-527)||(44181371-44181411)
chr3 (380-435)||(37975045-37975100)
chr3 (380-431)||(7166221-7166273)
chr3 (289-339)||(37975075-37975125)
[»] chr2 (13 HSPs)
chr2 (435-527)||(2381765-2381857)
chr2 (435-527)||(2387169-2387261)
chr2 (435-527)||(36216133-36216225)
chr2 (435-527)||(40322082-40322174)
chr2 (435-527)||(40325711-40325804)
chr2 (435-527)||(8264626-8264718)
chr2 (380-435)||(36216026-36216081)
chr2 (380-435)||(8264774-8264829)
chr2 (288-339)||(2387080-2387131)
chr2 (518-561)||(18586229-18586272)
chr2 (288-339)||(36216001-36216052)
chr2 (380-416)||(2387105-2387141)
chr2 (380-416)||(40322196-40322232)
[»] chr7 (14 HSPs)
chr7 (435-527)||(24050647-24050739)
chr7 (435-527)||(31297886-31297978)
chr7 (435-527)||(39751529-39751621)
chr7 (435-527)||(31297715-31297808)
chr7 (435-527)||(5098234-5098325)
chr7 (435-527)||(39755226-39755318)
chr7 (435-527)||(24059116-24059210)
chr7 (483-527)||(5094247-5094291)
chr7 (380-431)||(5098135-5098186)
chr7 (289-336)||(5094306-5094353)
chr7 (288-339)||(39751666-39751717)
chr7 (380-416)||(39751656-39751692)
chr7 (288-339)||(5098110-5098161)
chr7 (18-58)||(10612389-10612429)
[»] chr4 (16 HSPs)
chr4 (435-527)||(23314245-23314337)
chr4 (435-527)||(45698352-45698444)
chr4 (435-527)||(50998031-50998123)
chr4 (435-527)||(22158691-22158783)
chr4 (443-527)||(25920307-25920391)
chr4 (435-527)||(25923056-25923147)
chr4 (435-527)||(23317926-23318013)
chr4 (454-527)||(54397628-54397701)
chr4 (380-435)||(25922952-25923007)
chr4 (380-430)||(25920473-25920523)
chr4 (450-522)||(43433575-43433647)
chr4 (288-339)||(23317852-23317903)
chr4 (288-339)||(25922927-25922978)
chr4 (288-339)||(50997946-50997997)
chr4 (380-415)||(50997971-50998006)
chr4 (380-416)||(45698469-45698505)
[»] chr6 (5 HSPs)
chr6 (435-527)||(13845118-13845209)
chr6 (294-339)||(13848750-13848795)
chr6 (380-431)||(13845262-13845313)
chr6 (134-179)||(126868-126913)
chr6 (380-435)||(13848775-13848829)
[»] chr1 (8 HSPs)
chr1 (435-522)||(8026621-8026708)
chr1 (439-522)||(8272248-8272331)
chr1 (380-435)||(25650886-25650941)
chr1 (459-527)||(21826237-21826305)
chr1 (288-339)||(8026744-8026795)
chr1 (288-339)||(25650862-25650912)
chr1 (380-416)||(8026734-8026770)
chr1 (492-527)||(25644646-25644681)
[»] scaffold0265 (1 HSPs)
scaffold0265 (459-527)||(6479-6547)


Alignment Details
Target: scaffold0035 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 80259 - 80167
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80259 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 80167  T

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Target: scaffold0035; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 424
Target Start/End: Original strand, 84079 - 84123
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctctggatt 424  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||    
T  84079 aaatttgaatgaatgcatgatctttggcattaaattccctggatt 84123  T

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Target: scaffold0035; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 84105 - 84054
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||||| || |||||||||||    
T  84105 ccaaagatcatgcattcattcaaatttagttgaacgattttgcaaaaatcat 84054  T

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Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 1656344 - 1656252
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1656344 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 1656252  T

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Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 6334283 - 6334191
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6334283 agtgattgaattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 6334191  T

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Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 6337891 - 6337983
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6337891 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 6337983  T

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Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 36797896 - 36797804
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36797896 agtgattggattagaggtgaaatttaattattgtaatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 36797804  T

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Target: chr8; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 14033420 - 14033512
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14033420 agtgattggattagagatgaaatttaattattgtgatggtttaaattgtaaaaaatcatcaatttaagatggggtgaatatgcaaataataaa 14033512  T

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Target: chr8; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 24516865 - 24516957
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24516865 agtgattggattagaggataaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 24516957  T

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Target: chr8; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 36803901 - 36803993
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36803901 agtgattggattagaggagaaatttagttattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 36803993  T

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Target: chr8; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 417450 - 417543
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtg-aatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  417450 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaaatatgcaaataataaa 417543  T

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Target: chr8; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 12877146 - 12877054
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12877146 agtgattggattagaggagaaatttaattattatgatggtttaaattgtaaataatcattaatttaagatggggtgaatatgcaaataataaa 12877054  T

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Target: chr8; HSP #10
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 14029801 - 14029710
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14029801 agtgattggattagaggagaaatttaattattgtgatggtttaaattgta-aaaatcattaatttaagatggggtgaatatgcaaataataaa 14029710  T

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Target: chr8; HSP #11
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 23712778 - 23712687
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23712778 agtgattggattagaggagaaatttaattattgtgatggtttaaattgta-aaaatcattaatttaagatggggtgaatatgcaaataataaa 23712687  T

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Target: chr8; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 440 - 527
Target Start/End: Original strand, 1659902 - 1659988
Alignment:
Q  440 ttggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  1659902 ttggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattagtttaagat-gggtgaatatgcaaataataaa 1659988  T

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Target: chr8; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 440 - 527
Target Start/End: Complemental strand, 413597 - 413513
Alignment:
Q  440 ttggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  413597 ttggattagaggtaaaatttaattattgtgat---ttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 413513  T

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Target: chr8; HSP #14
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 451 - 527
Target Start/End: Original strand, 12880581 - 12880657
Alignment:
Q  451 gtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  12880581 gtgaaatttaattattatgatggtttaaattgtaaaaaattattaatttaagatgaggtgaatatgcaaataataaa 12880657  T

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Target: chr8; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 37404553 - 37404610
Alignment:
Q  470 atggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37404553 atggtttaaattgtaaaaaatcattaatttaagacggggtgaatatgcaaataataaa 37404610  T

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Target: chr8; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 27276718 - 27276812
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaa----gatggggtgaatatgcaaataataaa 527  Q
    |||||||||||| |||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    ||||||||||||||||||||||||||    
T  27276718 agtgattggattggagg-gaaatt-aattaatgtgatggtttaaattgtaaaacatcattaatttaagatggatggggtgaatatgcaaataataaa 27276812  T

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Target: chr8; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 24512968 - 24512923
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaat 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24512968 agtgattggattagaggtgaaatttaattattgtgatggtttaaat 24512923  T

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Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 417417 - 417366
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  417417 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 417366  T

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Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 14029841 - 14029892
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  14029841 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 14029892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 24516833 - 24516782
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  24516833 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 24516782  T

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Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 36803865 - 36803814
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  36803865 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 36803814  T

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Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 456 - 527
Target Start/End: Complemental strand, 27243419 - 27243344
Alignment:
Q  456 atttaattattgtgatggtttaaattgtaaaaaatcattaatttaag----atggggtgaatatgcaaataataaa 527  Q
    ||||||||| |||||||||||||||||||||| || |||||||||||    ||||| |||||||||||||| ||||    
T  27243419 atttaattaatgtgatggtttaaattgtaaaatattattaatttaagatgtatgggttgaatatgcaaatagtaaa 27243344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 456 - 527
Target Start/End: Complemental strand, 27254994 - 27254919
Alignment:
Q  456 atttaattattgtgatggtttaaattgtaaaaaatcattaatttaag----atggggtgaatatgcaaataataaa 527  Q
    ||||||||| |||||||||||||||||||||| || |||||||||||    ||||| |||||||||||||| ||||    
T  27254994 atttaattaatgtgatggtttaaattgtaaaatattattaatttaagatgtatgggttgaatatgcaaatagtaaa 27254919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 12877182 - 12877233
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||||||||| ||||||||||    
T  12877182 ccaaagatcatgcattcattcaaatttagttgaacgacttgacaaaaatcat 12877233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 417391 - 417427
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| |||||||||||||||||||||||||||||||    
T  417391 aaatttgaatgaatgcatgatctttggcattaaattc 417427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 6337831 - 6337867
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| |||||||||||||||||||||||||||||||    
T  6337831 aaatttgaatgaatgcatgatctttggcattaaattc 6337867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 12877208 - 12877172
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| |||||||||||||||||||||||||||||||    
T  12877208 aaatttgaatgaatgcatgatctttggcattaaattc 12877172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 14029867 - 14029831
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| |||||||||||||||||||||||||||||||    
T  14029867 aaatttgaatgaatgcatgatctttggcattaaattc 14029831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 24516807 - 24516843
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| |||||||||||||||||||||||||||||||    
T  24516807 aaatttgaatgaatgcatgatctttggcattaaattc 24516843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 36803839 - 36803875
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| |||||||||||||||||||||||||||||||    
T  36803839 aaatttgaatgaatgcatgatctttggcattaaattc 36803875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 6337857 - 6337806
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||| | ||||||||||||||    
T  6337857 ccaaagatcatgcattcattcaaatttagttgaacaatttggcaaaaatcat 6337806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 422
Target Start/End: Original strand, 37404509 - 37404551
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctctgga 422  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||    
T  37404509 aaattggaacgaatgcatgatctttagcattaaattccctgga 37404551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 31173923 - 31174015
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31173923 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 31174015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 27261601 - 27261509
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27261601 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 27261509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 28396313 - 28396405
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28396313 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaattattaatttaagatggggtgaatatgcaaataataaa 28396405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 31170329 - 31170237
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31170329 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 31170237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 28392513 - 28392421
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28392513 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatgggatgaatatgcaaataataaa 28392421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 41873502 - 41873409
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagat-ggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  41873502 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaatatcattaatttaagatgggggtgaatatgcaaataataaa 41873409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 41882131 - 41882223
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||    
T  41882131 agtgattggattagaagtgaaatttaattattgtgatggtttaaatcgtaaaaaatcattaatttaagatgaagtgaatatgcaaataataaa 41882223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 459 - 527
Target Start/End: Original strand, 27265537 - 27265604
Alignment:
Q  459 taattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27265537 taattattgtgatggtttaaattgtaaaaaatcattaatttaagat-gggtgaatatgcaaataataaa 27265604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 454 - 527
Target Start/End: Complemental strand, 20893073 - 20893000
Alignment:
Q  454 aaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||| |||||| | |||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||    
T  20893073 aaatctaattaatttgatggtttaaattgtaaagtgtcattaatttaaaatggggtgaatatgcaaataataaa 20893000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 454 - 527
Target Start/End: Original strand, 20914470 - 20914543
Alignment:
Q  454 aaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||| |||||| | ||||||||| ||||||||||  |||||||||||| |||||||||||||||||||||||||    
T  20914470 aaatctaattaatttgatggtttgaattgtaaaaggtcattaatttaaaatggggtgaatatgcaaataataaa 20914543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 27265446 - 27265497
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctctggattgcggttt 431  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  27265446 aaattggaacgaatgcatgatctttggcattaaattctctggattgcagttt 27265497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 27261650 - 27261701
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  27261650 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 27261701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 31170366 - 31170417
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  31170366 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 31170417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 448 - 502
Target Start/End: Complemental strand, 24090432 - 24090378
Alignment:
Q  448 gaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaag 502  Q
    |||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  24090432 gaggggaaatttaattaatgtgatgggttaaattgtaaaacatcattaatttaag 24090378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 31170392 - 31170356
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| |||||||||||||||||||||||||||||||    
T  31170392 aaatttgaatgaatgcatgatctttggcattaaattc 31170356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 41873573 - 41873537
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| |||||||||||||||||||||||||||||||    
T  41873573 aaatttgaatgaatgcatgatctttggcattaaattc 41873537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 27265472 - 27265421
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    ||||||||||||||||  || ||||||||||||||  |||||||||||||||    
T  27265472 ccaaagatcatgcattcgttccaatttagttgaacagcttggcaaaaatcat 27265421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 527
Target Start/End: Complemental strand, 24089513 - 24089479
Alignment:
Q  493 ttaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||| |||||||||||||||||||||||||    
T  24089513 ttaatttaaaatggggtgaatatgcaaataataaa 24089479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 27261676 - 27261640
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  27261676 aaatttgaatgaatgcatgatctttggtattaaattc 27261640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 41873547 - 41873587
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttg 328  Q
    |||||||||||||||| |||  |||||||||||||||||||    
T  41873547 ccaaagatcatgcattcattcaaatttagttgaacgacttg 41873587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 44185276 - 44185368
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44185276 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 44185368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 439 - 527
Target Start/End: Original strand, 3808809 - 3808897
Alignment:
Q  439 attggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3808809 attggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggcgaatatgcaaataataaa 3808897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 37982171 - 37982262
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37982171 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagat-gggtgaatatgcaaataataaa 37982262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 449 - 527
Target Start/End: Complemental strand, 3805397 - 3805319
Alignment:
Q  449 aggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3805397 aggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagacggggtgaatatgcaaataataaa 3805319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 452 - 527
Target Start/End: Complemental strand, 37975014 - 37974938
Alignment:
Q  452 tgaaatttaattattgtgatggtttaaattgtaaaaaa-tcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37975014 tgaaatttaattattgtgatggtttaaattgtaaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 37974938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 467 - 527
Target Start/End: Complemental strand, 44174870 - 44174811
Alignment:
Q  467 gtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44174870 gtgatggtttaaattgtaaaaaatcatta-tttaagatggggtgaatatgcaaataataaa 44174811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 467 - 527
Target Start/End: Complemental strand, 44181570 - 44181511
Alignment:
Q  467 gtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44181570 gtgatggtttaaattgtaaaaaatcatta-tttaagatggggtgaatatgcaaataataaa 44181511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 487 - 527
Target Start/End: Complemental strand, 44174711 - 44174671
Alignment:
Q  487 aaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44174711 aaatcattaatttaagatggggtgaatatgcaaataataaa 44174671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 487 - 527
Target Start/End: Complemental strand, 44181411 - 44181371
Alignment:
Q  487 aaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44181411 aaatcattaatttaagatggggtgaatatgcaaataataaa 44181371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 435
Target Start/End: Complemental strand, 37975100 - 37975045
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctctggattgcggtttgata 435  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||||||||| |||    
T  37975100 aaattggaacgaatgcatgatctttgacattaaattccctggattgcggtttcata 37975045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 7166221 - 7166273
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctct-ggattgcggttt 431  Q
    |||||||||||||||||||||| |||||| |||||||| | ||||||||||||    
T  7166221 aaattggaatgaatgcatgatcattggcaataaattctttaggattgcggttt 7166273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 37975075 - 37975125
Alignment:
Q  289 caaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||  || ||||||||||||||  |||||||||||||||    
T  37975075 caaagatcatgcattcgttccaatttagttgaacagcttggcaaaaatcat 37975125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 5e-45; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 2381857 - 2381765
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2381857 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 2381765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 2387169 - 2387261
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2387169 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 2387261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 36216133 - 36216225
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36216133 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 36216225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 40322174 - 40322082
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40322174 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 40322082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 40325711 - 40325804
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgt-aaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40325711 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 40325804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 8264718 - 8264626
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8264718 agtgattggattagaggggaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgtaaataataaa 8264626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 36216026 - 36216081
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctctggattgcggtttgata 435  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36216026 aaattggaatgaatgcatgatctttggcattaaattccctggattgcggtttgata 36216081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 380 - 435
Target Start/End: Complemental strand, 8264829 - 8264774
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctctggattgcggtttgata 435  Q
    |||||||||||||||||||||||| | |||||||||| ||||||||||||||||||    
T  8264829 aaattggaatgaatgcatgatcttcgacattaaattccctggattgcggtttgata 8264774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 2387131 - 2387080
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  2387131 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 2387080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 518 - 561
Target Start/End: Complemental strand, 18586272 - 18586229
Alignment:
Q  518 aaataataaagataaaattagtagggttttattaattaccttgt 561  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  18586272 aaataataaagataaaattaatagggttttattaattaccttgt 18586229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 36216052 - 36216001
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  36216052 ccaaagatcatgcattcattccaatttagttgaaccacttggcaaaaatcat 36216001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 2387105 - 2387141
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| |||||||||||||||||||||||||||||||    
T  2387105 aaatttgaatgaatgcatgatctttggcattaaattc 2387141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 40322232 - 40322196
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| |||||||||||||||||||||||||||||||    
T  40322232 aaatttgaatgaatgcatgatctttggcattaaattc 40322196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 24050739 - 24050647
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24050739 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 24050647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 31297886 - 31297978
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31297886 agtgtttggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 31297978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 39751621 - 39751529
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39751621 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 39751529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 31297808 - 31297715
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaa-aaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31297808 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 31297715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 5098234 - 5098325
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  5098234 agtgattggattagaggtgaaatttaattattgtgatggtttaaaatgtaaaaaatcattaatttaagat-gggtgaatatgcaaataataaa 5098325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 39755226 - 39755318
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||    
T  39755226 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattcatttaaaatgaggtgaatatgcaaataataaa 39755318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 24059116 - 24059210
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgt--aaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  24059116 agtgatttgattagaggtgaaatttaattattgtgatggcttaaattgtaaaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 24059210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 483 - 527
Target Start/End: Complemental strand, 5094291 - 5094247
Alignment:
Q  483 taaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5094291 taaaaaatcattaatttaagatggggtgaatatgcaaataataaa 5094247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 5098135 - 5098186
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctctggattgcggttt 431  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  5098135 aaattggaacgaatgcatgatctttggcattaaattccctggattgcggttt 5098186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 336
Target Start/End: Original strand, 5094306 - 5094353
Alignment:
Q  289 caaagatcatgcattgatttcaatttagttgaacgacttggcaaaaat 336  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||||||||    
T  5094306 caaagattatgcattcattccaatttagttgaacgacttggcaaaaat 5094353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 39751666 - 39751717
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||| ||||||||||||||||    
T  39751666 ccaaagatcatgcattcattcaaatttagttgaaccacttggcaaaaatcat 39751717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 39751692 - 39751656
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| |||||||||||||||||||||||||||||||    
T  39751692 aaatttgaatgaatgcatgatctttggcattaaattc 39751656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 5098161 - 5098110
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    ||||||||||||||||  || ||||||||||||||  |||||||||||||||    
T  5098161 ccaaagatcatgcattcgttccaatttagttgaacagcttggcaaaaatcat 5098110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 10612429 - 10612389
Alignment:
Q  18 catctccggagaatatatcgactgtaatttccttgattaat 58  Q
    |||||||||||||||| |||| |||||||||||||| ||||    
T  10612429 catctccggagaatatttcgagtgtaatttccttgactaat 10612389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 23314337 - 23314245
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23314337 agtgattggattagaggtgaaatttaattagtgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 23314245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 45698444 - 45698352
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45698444 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 45698352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 50998031 - 50998123
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50998031 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 50998123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 22158783 - 22158691
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22158783 agtgattgaattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatagggtgaatatgcaaataataaa 22158691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 443 - 527
Target Start/End: Complemental strand, 25920391 - 25920307
Alignment:
Q  443 gattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25920391 gattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaattattaatttaagatggggtgaatatgcaaataataaa 25920307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 25923056 - 25923147
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  25923056 agtgattggattagaggagaaatttaattattgtgatggtttaaattataaaaaatcattaatttaagat-gggtgaatatgcaaataataaa 25923147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 23317926 - 23318013
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||    
T  23317926 agtgattggattagaggagaaatttaattattgtgatggtttaaattgtaaaaaatca-----ttaagatggggtgaatatgcaaataataaa 23318013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 454 - 527
Target Start/End: Complemental strand, 54397701 - 54397628
Alignment:
Q  454 aaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  54397701 aaatttaattattgtgatagtttaaattgtaaaaaatcattaatttaagatggagtaaatatgcaaataataaa 54397628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 25922952 - 25923007
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctctggattgcggtttgata 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25922952 aaattggaatgaatgcatgatctttggcattaaattctctggattgctgtttgata 25923007  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 430
Target Start/End: Complemental strand, 25920523 - 25920473
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctctggattgcggtt 430  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  25920523 aaattggaacgaatgcatgatctttggcattaaattccctggattgcggtt 25920473  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 522
Target Start/End: Original strand, 43433575 - 43433647
Alignment:
Q  450 ggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaata 522  Q
    ||||||||  ||||| | ||||||| ||||||||||||  |||||||||||| ||||||||||||||||||||    
T  43433575 ggtgaaatcaaattaatttgatggtgtaaattgtaaaatgtcattaatttaaaatggggtgaatatgcaaata 43433647  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 23317903 - 23317852
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  23317903 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 23317852  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 25922978 - 25922927
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  25922978 ccaaagatcatgcattcattccaatttagttgaacgacttgacaaaaatcat 25922927  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 50997997 - 50997946
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||||||||| ||||||||||    
T  50997997 ccaaagatcatgcattcattcaaatttagttgaacgacttgccaaaaatcat 50997946  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 415
Target Start/End: Original strand, 50997971 - 50998006
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaatt 415  Q
    ||||| ||||||||||||||||||||||||||||||    
T  50997971 aaatttgaatgaatgcatgatctttggcattaaatt 50998006  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 45698505 - 45698469
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  45698505 aaatttgaatgaatgcatggtctttggcattaaattc 45698469  T

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Target: chr6 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 13845209 - 13845118
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13845209 agtgattggattagaggtgaaatttaattattgtga-ggtttaaattgtaaaaaatcattaatttaagatggggcgaatatgcaaataataaa 13845118  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 13848795 - 13848750
Alignment:
Q  294 atcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  13848795 atcatgcattcatttcaatttagttgaacgacttggcaaaaatcat 13848750  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 13845313 - 13845262
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctctggattgcggttt 431  Q
    ||||||||| |||||||||||||||| |||||||||| ||| ||||||||||    
T  13845313 aaattggaacgaatgcatgatctttgacattaaattccctgaattgcggttt 13845262  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 126868 - 126913
Alignment:
Q  134 aggaattcaagctaaaatatgggatattgacactaggtccatgcac 179  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||    
T  126868 aggaattcaagttaaaatatgggatattgacaccaagtccatgcac 126913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 13848775 - 13848829
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctctggattgcggtttgata 435  Q
    |||||| |||||||||||||| |||  ||||||||||||||||||| |||||||||    
T  13848775 aaattgaaatgaatgcatgat-tttcacattaaattctctggattgtggtttgata 13848829  T

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Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 435 - 522
Target Start/End: Complemental strand, 8026708 - 8026621
Alignment:
Q  435 agtgattggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaata 522  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8026708 agtgattggattagaggagaaatttaattattacgatggtttaaattgtaaataatcattaatttaagatggggtgaatatgcaaata 8026621  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 439 - 522
Target Start/End: Complemental strand, 8272331 - 8272248
Alignment:
Q  439 attggattagaggtgaaatttaattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaata 522  Q
    ||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  8272331 attggattagaggagaaatttaaataatgtgatggtttaaattgtaaaacatcattaatttaaaatggggtaaatatgcaaata 8272248  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 25650886 - 25650941
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattctctggattgcggtttgata 435  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25650886 aaattggaatgaatgcatgatctttggcattaaattccctggattgcggtttgata 25650941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 459 - 527
Target Start/End: Original strand, 21826237 - 21826305
Alignment:
Q  459 taattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||| | ||||| ||||||||||||||   ||||||||||| |||||||||||||||||||||||||    
T  21826237 taattaatttgatgatttaaattgtaaaatgacattaatttaaaatggggtgaatatgcaaataataaa 21826305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 8026744 - 8026795
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| |||  ||||||||||||||||||| ||||||||||    
T  8026744 ccaaagatcatgcattcattcaaatttagttgaacgacttgacaaaaatcat 8026795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 25650912 - 25650862
Alignment:
Q  288 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 339  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  25650912 ccaaagatcatgcattcattccaatttagttgaacgactt-gcaaaaatcat 25650862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 8026770 - 8026734
Alignment:
Q  380 aaattggaatgaatgcatgatctttggcattaaattc 416  Q
    ||||| |||||||||||||||||||||||||||||||    
T  8026770 aaatttgaatgaatgcatgatctttggcattaaattc 8026734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 527
Target Start/End: Complemental strand, 25644681 - 25644646
Alignment:
Q  492 attaatttaagatggggtgaatatgcaaataataaa 527  Q
    ||||||||||||||||| ||||||||||||||||||    
T  25644681 attaatttaagatggggggaatatgcaaataataaa 25644646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 459 - 527
Target Start/End: Complemental strand, 6547 - 6479
Alignment:
Q  459 taattattgtgatggtttaaattgtaaaaaatcattaatttaagatggggtgaatatgcaaataataaa 527  Q
    |||||| | ||||| ||||||||||||||   ||||||||||| |||||||||||||||||||||||||    
T  6547 taattaatttgatgatttaaattgtaaaatgacattaatttaaaatggggtgaatatgcaaataataaa 6479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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