View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_17 (Length: 544)
Name: NF8899_low_17
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 14 - 529
Target Start/End: Complemental strand, 47286179 - 47285664
Alignment:
| Q |
14 |
agggaaagaacttcatgccagcacttaaaacatgtggatttctcaaagtaacggattcgaatcctagttggattattgagaatatgccaatggcaagagt |
113 |
Q |
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| T |
47286179 |
agggaaagaacttcatgccagcacttaaaacatgtggatttctcaaagtaacggattcgaatcctagttggattattgagaatatgccaatggcaagagt |
47286080 |
T |
|
| Q |
114 |
aatgggagacatgttaattctacctaacggcgatgttattataattaacggcgctggatcaggtacagctggatgggaaaacggatgtcaacctgtttta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47286079 |
aatgggagacatgttaattctacctaacggcgatgttattataattaacggcgctggatcaggtacagctggatgggaaaacggacgtcaacctgtttta |
47285980 |
T |
|
| Q |
214 |
acaccggtaattttcagttcatcagaaaccaaatcagataaacggtttagtgtaatgtcaccggcttctagacctagactctaccattcatctgcaattg |
313 |
Q |
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| T |
47285979 |
acaccggtaattttccgttcatcagaaaccaaatcagataaacgatttagtgtaatgtcaccagcttctagacctagactctaccattcatctgcaattg |
47285880 |
T |
|
| Q |
314 |
tgttaagagatggaagagttttagtaggtggtagtaatccacatgtaaattacaattttaccggagttgaatttccaaccgatttaagcttagaggcatt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47285879 |
tgttaagagatggaagagttttagtaggtggtagtaatccacatgtaaattacaattttaccggagttgaatttccaaccgatttaagcttagaggcatt |
47285780 |
T |
|
| Q |
414 |
ttctccgccctatttgtcgttggagtttgatctggtgcggccaacgatttggcatgtcaccaataaaattttagggtatagggtgttttattatgtgaca |
513 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47285779 |
ttctccgccctatttgtcgttggagtttgatctagtgcggccaacgatttggcatgtcaccaataaaattttagggtatagggtgttttattatgtgaca |
47285680 |
T |
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| Q |
514 |
tttacggtagctaagt |
529 |
Q |
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|||||||||||||||| |
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| T |
47285679 |
tttacggtagctaagt |
47285664 |
T |
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