View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_19 (Length: 541)
Name: NF8899_low_19
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 49266517 - 49265993
Alignment:
| Q |
1 |
tttgtgcagagagatcaaaattgctgagttcctcgagtcctaaggcagaattggagagtgtctcgggtcctaagacgcgtgatgaggcagaagccaatcc |
100 |
Q |
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| T |
49266517 |
tttgtgcagagagatcaaaattgctgagttcctcgagtcctaaggcagaattggagagtgtctcgggtcctaagacgcgtgatgaggcagaagccaatcc |
49266418 |
T |
|
| Q |
101 |
gcgtgcacgtacattcacattacaagagcttaaagccgcaaccaacaactttgcgccggaatgttttataggtgaagggggctttgggcctgtatacaaa |
200 |
Q |
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| T |
49266417 |
gcgtgcacatacattcacattacaagagcttaaagccgcaaccaataactttgcgccggaatgttttataggtgaagggggctttgggcctgtatacaaa |
49266318 |
T |
|
| Q |
201 |
ggttaccttgagagcgctaaaaacgtaagttgtgatagctgttgcaaagattttggtttttgcaaatgctagttcatccaagcataaactatatgtagtg |
300 |
Q |
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| T |
49266317 |
ggttaccttgagagcgctaaaaacgtaagttgtgatagctgttgcaaagattttggtttttgcaaatgctagttcatccaagcataaactatatgtagtg |
49266218 |
T |
|
| Q |
301 |
gtcaatttttcatttcattaacattgtacattttaaatatgtgtgaatgaaaaatgatgtttgtgcaacaggtagttgctgtgaaacagcttaacctaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49266217 |
gtcaatttttcatttcattaacattgtacattttaaatatgtgtgaatgaaaaatgatgtttgtgcaacaggtagttgctgtgaaacagctaaacctaaa |
49266118 |
T |
|
| Q |
401 |
aggtggtcaaggagatcgagaatttttggtggaagttctaatgctaaacctcttaaatcacaaacatcttgtgaacttggttggttattgtgctgatggc |
500 |
Q |
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| T |
49266117 |
aggtggtcaaggagatcgagaatttttggtggaagttctaatgctaaacctcttaaagcacaaacatcttgtgaacttggttggttattgtgctgatggc |
49266018 |
T |
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| Q |
501 |
aatcaacgattacttgtttatgagt |
525 |
Q |
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| T |
49266017 |
aatcaacgactacttgtttatgagt |
49265993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 496
Target Start/End: Original strand, 6601699 - 6601826
Alignment:
| Q |
369 |
caggtagttgctgtgaaacagcttaacctaaaaggtggtcaaggagatcgagaatttttggtggaagttctaatgctaaacctcttaaatcacaaacatc |
468 |
Q |
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|||||||||||||| ||||||||| ||| || || ||||||| ||||||| ||||||||||||||||| ||||| | ||||||| ||||| | ||| |
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| T |
6601699 |
caggtagttgctgtaaaacagcttgaccggaatggacttcaaggaaatcgagagtttttggtggaagttctcatgctcagcctcttacatcacccaaatc |
6601798 |
T |
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| Q |
469 |
ttgtgaacttggttggttattgtgctga |
496 |
Q |
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||||||| ||| |||||||||| ||||| |
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| T |
6601799 |
ttgtgaatttgattggttattgcgctga |
6601826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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