View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_20 (Length: 538)
Name: NF8899_low_20
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_20 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 10 - 538
Target Start/End: Complemental strand, 43397239 - 43396710
Alignment:
| Q |
10 |
agcagagacacgacagcaggctcacgacacaccagaaccggcctcagacaactacaactgaagctaggcgcgcagcctttccctttcaagacaaacatag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43397239 |
agcagagacacgacagcaggctcacgacacaccagaaccggcctcagacaactacaactgaagctaggcgcgcagcctttccctttcaagacaagcatag |
43397140 |
T |
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| Q |
110 |
ggattccaacaccattcgtagtaaaggcaaaccggaatcttcgtatgatgcaacaaccaccgccaagacataaccttgatttcctccactagctcatcca |
209 |
Q |
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| T |
43397139 |
ggattccaacaccattcgtagtaaaggcaaaccggaatcttcgtaccatgcaacaaccaccgccaagacataaccttgatttcctccactagctcatcca |
43397040 |
T |
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| Q |
210 |
cctcaaaattggtttcattaaaaattttaccatttctagctttccacaacacccaaggtggattttcaccaccccttttagcataaggtggatttttcgg |
309 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43397039 |
cctcaaaattggtttcattaaaaaatttaccatttctagctttccacaacacccaaggtggattttcaccaccccttttagcataaggtggatttttcgg |
43396940 |
T |
|
| Q |
310 |
cggtccaagaaacaaagctagaggtgataactccggctttatgttattctctttggggtggtgaagattgtgattgggtgtttagagcgtcggaaggaaa |
409 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43396939 |
cggtccaagaaacaaagctagaagtgataactccggctttatgttattctctttggggtggtgaagattgtgattgggcgtttagagcgtcggaaggaaa |
43396840 |
T |
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| Q |
410 |
tagtggtggaattctttctctttggagaaaatcaagcgcaaattttctattttcttttcaaggggaaggatatgtgggggtgtgccttgaat-gtgggtg |
508 |
Q |
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| T |
43396839 |
tagtggtggaattctttctctttggagaaaatcaagcgcaaattttcgattttcttttcaaggggaaggatatgtgggggtgtgccttgaatggggggtg |
43396740 |
T |
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| Q |
509 |
aagaagaagagatgtattgtggttaatgtt |
538 |
Q |
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| T |
43396739 |
aagaagaagagatgtattgtggttaatgtt |
43396710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 3499398 - 3499446
Alignment:
| Q |
160 |
caacaaccaccgccaagacataaccttgatttcctccactagctcatcc |
208 |
Q |
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| T |
3499398 |
caacaacgacctccaagacatcaccttgatctccttcactagctcatcc |
3499446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 442
Target Start/End: Complemental strand, 8507928 - 8507778
Alignment:
| Q |
292 |
ataaggtggatttttcggcggtccaagaaacaaagctagaggtgataactccggctttatgttattctctttggggtggtgaagattgtgattgggtgtt |
391 |
Q |
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||||||| ||||||| |||| | |||||||||||| |||| | ||||| |||||||| |||||||| | ||||| |||| ||||||||||||| ||| |
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| T |
8507928 |
ataaggtcgattttttggcgcttcaagaaacaaagttagaagatataaccccggctttgtgttattccttgtggggaagtgatgattgtgattgggagtt |
8507829 |
T |
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| Q |
392 |
tagagcgtcggaaggaaatagtggtggaattctttctctttggagaaaatc |
442 |
Q |
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|||| | || ||||| ||||||||||||||||| ||| ||||||| ||||| |
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| T |
8507828 |
tagaccttccgaaggtaatagtggtggaattctatctatttggaggaaatc |
8507778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 375 - 502
Target Start/End: Original strand, 25318320 - 25318447
Alignment:
| Q |
375 |
gattgtgattgggtgtttagagcgtcggaaggaaatagtggtggaattctttctctttggagaaaatcaagcgcaaattttctattttcttttcaagggg |
474 |
Q |
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||||||||||||| ||||||||| || ||||| ||||| | || || ||| ||||||||||||||| || |||| | |||||||||||||||| |
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| T |
25318320 |
gattgtgattgggcgtttagagcttccgaaggtgcgagtggggctatcctatctatttggagaaaatcaaatgcttgtttttttttttcttttcaagggg |
25318419 |
T |
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| Q |
475 |
aaggatatgtgggggtgtgccttgaatg |
502 |
Q |
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| T |
25318420 |
aaggatatgtgggggtgtgccttgaatg |
25318447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 493
Target Start/End: Complemental strand, 9662633 - 9662531
Alignment:
| Q |
391 |
ttagagcgtcggaaggaaatagtggtggaattctttctctttggagaaaatcaagcgcaaattttctattttcttttcaaggggaaggatatgtgggggt |
490 |
Q |
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| T |
9662633 |
ttagagcgtccgaaggtagtagtgagggtattctttctatttggagaaaatcaagtgctaacttgttattttcattccaaagggaaggatatgtaggggt |
9662534 |
T |
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| Q |
491 |
gtg |
493 |
Q |
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||| |
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| T |
9662533 |
gtg |
9662531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 40086986 - 40086943
Alignment:
| Q |
222 |
tttcattaaaaattttaccatttctagctttccacaacacccaa |
265 |
Q |
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| T |
40086986 |
tttcattaaaaattttatcattcctagctttccacaatacccaa |
40086943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 6495552 - 6495524
Alignment:
| Q |
113 |
ttccaacaccattcgtagtaaaggcaaac |
141 |
Q |
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| T |
6495552 |
ttccaacaccattcgtagtaaaggcaaac |
6495524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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