View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_24 (Length: 492)
Name: NF8899_low_24
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_24 |
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| [»] scaffold0143 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 33518692 - 33518230
Alignment:
| Q |
19 |
cacatcttcatccaaaacatatagtatatttttggatcaaggattttggaagacaaaatttaggtctatgtttggatcaaggattttggaggactaactc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33518692 |
cacatcttcatccaaaacatatagtatatttttggatcaaggattttggaagacaaaatttaggtctatgtttggatcaaggattttggaggactaactc |
33518593 |
T |
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| Q |
119 |
tagtaatgaacaaagcaattgaatagttctacttgtattaattgtgttaaacttgtttaattattaaatgctgtgtttttctcccttttagagcatgatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33518592 |
tagtaatgaacaaagcaattgaatagttctacttgtattaattgtgttaaacttgtttaattattaaatgctgtgtttttctcccttttagagcatgatg |
33518493 |
T |
|
| Q |
219 |
tctggatcaacctctaaataagat-accttatgtatatactttgaatattcttccattactaagatgtattcttgatatatctattatcactttacaaga |
317 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33518492 |
tctggatcaacctctaaataagatcaccttgtgtatatactttgaatattc-tccattactaagatgtattcttgatatatctattatcactctacaaga |
33518394 |
T |
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| Q |
318 |
attttacaaag-gnnnnnnnncactatttgaactcataaatgaatacatgagccannnnnnnaaaatacctaataacaaagaaaaggttcaatacgtttg |
416 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
33518393 |
attttacaaagaaaaaaaaaacactatttgaactcataaatgaatacatgagcctttttttttaaatacctaataacaaaaaaaaggttcaatacgtttg |
33518294 |
T |
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| Q |
417 |
gttgactcgtttcttttccttttgttcaggaattgtttgattctattttgtggaatgatgtcca |
480 |
Q |
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| T |
33518293 |
gttgactcgtttcttttcctcttgttcaggaattgtttgattctattttgtggaatgatgtcca |
33518230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0143 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0143
Description:
Target: scaffold0143; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 103 - 2
Alignment:
| Q |
19 |
cacatcttcatccaaaacatatagtatatttttggatcaaggattttggaagacaaaatttaggtctatgtttggatcaaggattttggaggactaactc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103 |
cacatcttcatccaaaacatatagtatatttttggatcaaggattttggaagacaaaatttaggtctatgtttggatcaaggattttggaggactaactc |
4 |
T |
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| Q |
119 |
ta |
120 |
Q |
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|| |
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| T |
3 |
ta |
2 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 309
Target Start/End: Complemental strand, 55447448 - 55447265
Alignment:
| Q |
127 |
aacaaagcaattgaatagttctacttgtattaattgtgttaaacttgtttaattattaa-atgctgtgtttttctcccttttagagcatgatgtctggat |
225 |
Q |
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|||| |||| ||||||||||||| || ||| |||||| |||| || |||||||||||| | || |||||| |||||| |||| | ||||| |||||| |
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| T |
55447448 |
aacatagcagttgaatagttctatttttatgaattgttataaaattatttaattattaatactttgagtttttatcccttctagaccgtgatgcctggat |
55447349 |
T |
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| Q |
226 |
caacctctaaataagat-accttatgtatatactttgaatattcttccattactaagatgtattcttgatatatctattatcact |
309 |
Q |
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| T |
55447348 |
caacct-tgaataaggccaccttgtatataaactttgaatattcttccatttttaagaagtatacttgatatacctattatcact |
55447265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 480
Target Start/End: Complemental strand, 55447217 - 55447144
Alignment:
| Q |
407 |
aatacgtttggttgactcgtttcttttccttttgttcaggaattgtttgattctattttgtggaatgatgtcca |
480 |
Q |
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| T |
55447217 |
aatacatttggttgattcatttcgtatcctcttctttaggaattgtttgattctattttgtggaatgatgtcca |
55447144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 478
Target Start/End: Original strand, 7045986 - 7046023
Alignment:
| Q |
441 |
ttcaggaattgtttgattctattttgtggaatgatgtc |
478 |
Q |
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| T |
7045986 |
ttcaggaattgtttgattctattttgtggaatgatgtc |
7046023 |
T |
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