View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8899_low_26 (Length: 487)

Name: NF8899_low_26
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8899_low_26
NF8899_low_26
[»] scaffold0153 (2 HSPs)
scaffold0153 (404-487)||(4730-4813)
scaffold0153 (404-487)||(11750-11833)
[»] chr8 (4 HSPs)
chr8 (404-487)||(22237590-22237673)
chr8 (404-487)||(19807933-19808016)
chr8 (404-484)||(21321676-21321756)
chr8 (404-484)||(21326274-21326354)
[»] chr3 (3 HSPs)
chr3 (404-487)||(52989397-52989480)
chr3 (404-485)||(14966637-14966718)
chr3 (224-383)||(15570016-15570176)
[»] chr2 (5 HSPs)
chr2 (404-487)||(27472886-27472969)
chr2 (404-487)||(34858721-34858804)
chr2 (404-487)||(34873783-34873866)
chr2 (404-487)||(20915738-20915821)
chr2 (438-476)||(22497852-22497890)
[»] scaffold0074 (1 HSPs)
scaffold0074 (404-480)||(1375-1451)
[»] scaffold0395 (1 HSPs)
scaffold0395 (404-483)||(11334-11413)
[»] chr6 (2 HSPs)
chr6 (404-487)||(27851636-27851719)
chr6 (404-487)||(20733783-20733866)
[»] chr4 (5 HSPs)
chr4 (404-487)||(10057105-10057188)
chr4 (410-478)||(9886387-9886455)
chr4 (438-479)||(13234547-13234588)
chr4 (172-219)||(8123798-8123845)
chr4 (172-221)||(19804926-19804975)
[»] scaffold0174 (1 HSPs)
scaffold0174 (404-480)||(13074-13150)
[»] chr7 (5 HSPs)
chr7 (404-480)||(11091094-11091170)
chr7 (404-487)||(48812471-48812554)
chr7 (404-487)||(46580260-46580343)
chr7 (404-441)||(11309988-11310025)
chr7 (438-479)||(16379779-16379820)
[»] scaffold0032 (1 HSPs)
scaffold0032 (404-487)||(67727-67810)
[»] scaffold0686 (1 HSPs)
scaffold0686 (404-487)||(869-952)
[»] scaffold0381 (1 HSPs)
scaffold0381 (410-478)||(12089-12157)
[»] scaffold0364 (1 HSPs)
scaffold0364 (408-479)||(13877-13948)
[»] chr5 (2 HSPs)
chr5 (437-480)||(13938457-13938500)
chr5 (438-473)||(25582095-25582130)
[»] scaffold1405 (1 HSPs)
scaffold1405 (438-476)||(1214-1252)
[»] scaffold0226 (1 HSPs)
scaffold0226 (224-298)||(12022-12097)


Alignment Details
Target: scaffold0153 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 4813 - 4730
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4813 cgagcataggaaaatcaacttttctggaattttctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 4730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 11833 - 11750
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11833 cgagcataggaaaatcaacttttctggaattttctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 11750  T

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Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 22237590 - 22237673
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22237590 cgagcataggaaaatcaacttttctggaattttctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 22237673  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 19807933 - 19808016
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19807933 cgagcataggaaaatcaacttttctggaattttctgttctgaattagatttgggagtcttcatgaaagttgtagataattttgt 19808016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 21321676 - 21321756
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattt 484  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  21321676 cgagcataggaaaatcaacttttctggaattttctgttctgaattaggtttgggagtcttcatgaaagtttttgataattt 21321756  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 21326274 - 21326354
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattt 484  Q
    |||| |||||||||||||| ||| |||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||    
T  21326274 cgagtataggaaaatcaacgtttctggaattttctgttctgaattaggtttgggagtctgcatgaaagctttagataattt 21326354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 52989397 - 52989480
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    |||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52989397 cgagcataggaaaatcaatttttctggaattttctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 52989480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 404 - 485
Target Start/End: Complemental strand, 14966718 - 14966637
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataatttt 485  Q
    |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14966718 cgagcatacgaaaatcaacttttctggaattttctgttctgaattaggtttgggagtcttcatgaaagttgtagataatttt 14966637  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 383
Target Start/End: Complemental strand, 15570176 - 15570016
Alignment:
Q  224 agattgtttccaagaaagaagcatcctccagaggtgca-tttctatcatcagcgcttccttcccagccagcatcacgattaccaatcaacattgagtttt 322  Q
    ||||| ||||| ||| |||| ||||||||| |||| |  ||||| |||||||| |||||| || || ||||||||| || ||| |||| | | |||| ||    
T  15570176 agattatttcctagatagaaacatcctccaaaggtactctttctgtcatcagcacttcctgcctagtcagcatcacaataacccatcagcttagagtctt 15570077  T
Q  323 cattgtgagaatacagaattccataatcacttgtacagttgatgtatttcaggattctctt 383  Q
    ||||||  || || |  || |||||||||||| |||  |||||||||||||| || |||||    
T  15570076 cattgtatgagtataagatcccataatcacttatactattgatgtatttcagtatcctctt 15570016  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 27472969 - 27472886
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27472969 cgagcataggaaaatcaacttttctggaattttctgttctgaattaggtttgggagtcttcattaaagttgtagataattttgt 27472886  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 34858721 - 34858804
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34858721 cgagcataggaaaatcaacttttctggaattttctgttctgaattaggtttggaagtcttcatgaaagttgtagataattttgt 34858804  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 34873783 - 34873866
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34873783 cgagcataggaaaatcaacttttctggaattttctgttctgaattaggtttggaagtcttcatgaaagttgtagataattttgt 34873866  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 20915821 - 20915738
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| | |||||||||||||    
T  20915821 cgagcataggaaaatcaacttttttggaattttatgttctgaattaggtttgggagtcttcatgaaagatttagataattttgt 20915738  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 438 - 476
Target Start/End: Original strand, 22497852 - 22497890
Alignment:
Q  438 tgttctgaattaggtttgggagtcttcatgaaagttgta 476  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  22497852 tgttccgaattaggtctgggagtcttcatgaaagttgta 22497890  T

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Target: scaffold0074 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 404 - 480
Target Start/End: Complemental strand, 1451 - 1375
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagata 480  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1451 cgagcataggaaaatcaacttttctggaattttctgttctgaattaggtttgggagtcttcatgaaagttgtagata 1375  T

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Target: scaffold0395 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 404 - 483
Target Start/End: Complemental strand, 11413 - 11334
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataatt 483  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  11413 cgagcataggaaaatcaacttttctggaattttctattctgaattaggtttgggagtcttcatgaaagttgtagataatt 11334  T

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Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 27851719 - 27851636
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  27851719 cgagcataggaaaatcaacttttctggaattttctgttttgaattaggtttgggagtcttcatgaaagttttagataattttgt 27851636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 20733783 - 20733866
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||| |||||||||| |||| |||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  20733783 cgagcattggaaaatcaatttttctggaattttctattctgaattaggtttgggagtattcatgaaagttttagataattttgt 20733866  T

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Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 10057188 - 10057105
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  10057188 cgagcataggaaaatcaacttttctggaattttctgttctgaattaggtttgggagtcttcaccaaagttgtagataattttgt 10057105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 478
Target Start/End: Complemental strand, 9886455 - 9886387
Alignment:
Q  410 taggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtaga 478  Q
    ||||||||||||||||| |   | || || ||||||||||||||||||||| |||||||||||||||||    
T  9886455 taggaaaatcaacttttctaccactttcttttctgaattaggtttgggagtattcatgaaagttgtaga 9886387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 438 - 479
Target Start/End: Complemental strand, 13234588 - 13234547
Alignment:
Q  438 tgttctgaattaggtttgggagtcttcatgaaagttgtagat 479  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  13234588 tgttccgaattaggtttggtagtcttcatgaaagttgtagat 13234547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 8123845 - 8123798
Alignment:
Q  172 tatagattgaatactgcttcatgttctcgggattcttcagtttcttct 219  Q
    ||||| ||||||||||| |||||||||| ||| |||||||||||||||    
T  8123845 tataggttgaatactgcctcatgttctcaggagtcttcagtttcttct 8123798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 19804975 - 19804926
Alignment:
Q  172 tatagattgaatactgcttcatgttctcgggattcttcagtttcttcttc 221  Q
    ||||| ||||||||||||||||||| || ||| ||||||||| |||||||    
T  19804975 tataggttgaatactgcttcatgttttcaggagtcttcagttccttcttc 19804926  T

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Target: scaffold0174 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 404 - 480
Target Start/End: Complemental strand, 13150 - 13074
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagata 480  Q
    ||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  13150 cgagcataggaaaatcaacttttctggaattgtctgttctgaattaggtttgggagtcttcatgaaagttgtagata 13074  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 404 - 480
Target Start/End: Complemental strand, 11091170 - 11091094
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagata 480  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  11091170 cgagcataggaaaatcaacttttctggaattttctgttctgaattaagtttgggagtcttcatgaaagttgtagata 11091094  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 48812554 - 48812471
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||||||||    
T  48812554 cgagcataggaaaatcaacttttctggaattttctgttccgaattaggtttggaagtcttcatgaaagttgtatataattttgt 48812471  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 46580260 - 46580343
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    |||||||||||||||||| ||||   |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46580260 cgagcataggaaaatcaaattttcctgaattttctattctgaattgggtttgggagtcttcatgaaagttgtagataattttgt 46580343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 11310025 - 11309988
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgtt 441  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  11310025 cgagcttaggaaaatcaacttttctggaatttcctgtt 11309988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 479
Target Start/End: Original strand, 16379779 - 16379820
Alignment:
Q  438 tgttctgaattaggtttgggagtcttcatgaaagttgtagat 479  Q
    |||| |||||||| ||||||||||||||||||||| ||||||    
T  16379779 tgttttgaattagatttgggagtcttcatgaaagtcgtagat 16379820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 67810 - 67727
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    |||||||||||||||| |||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  67810 cgagcataggaaaatccacttttatgaaattttctgttctgaattagatttgggagtcttcatgaaagttgtagataattttgt 67727  T

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Target: scaffold0686 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 952 - 869
Alignment:
Q  404 cgagcataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagataattttgt 487  Q
    ||||||||||||||||||||||| |||| ||  |||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  952 cgagcataggaaaatcaacttttctggatttctctgttctgaattaggtttaggaatcttcatcaaagttgtagataattttgt 869  T

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Target: scaffold0381 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 478
Target Start/End: Original strand, 12089 - 12157
Alignment:
Q  410 taggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtaga 478  Q
    ||||||||||||||||| |   | || || ||||||||||||||||||||| |||||||||||||||||    
T  12089 taggaaaatcaacttttctaccactttcttttctgaattaggtttgggagtattcatgaaagttgtaga 12157  T

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Target: scaffold0364 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 479
Target Start/End: Complemental strand, 13948 - 13877
Alignment:
Q  408 cataggaaaatcaacttttttggaatttcctgttctgaattaggtttgggagtcttcatgaaagttgtagat 479  Q
    |||||||||||||| |||| ||  | ||  ||||| ||||||||||||| ||||||||||||||||||||||    
T  13948 cataggaaaatcaatttttctgccactttatgttccgaattaggtttggaagtcttcatgaaagttgtagat 13877  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 13938500 - 13938457
Alignment:
Q  437 ctgttctgaattaggtttgggagtcttcatgaaagttgtagata 480  Q
    |||||| |||||||||||||| ||||||||||||||||||||||    
T  13938500 ctgttccgaattaggtttgggcgtcttcatgaaagttgtagata 13938457  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 473
Target Start/End: Original strand, 25582095 - 25582130
Alignment:
Q  438 tgttctgaattaggtttgggagtcttcatgaaagtt 473  Q
    ||||||||||||||||||||||||||||||||||||    
T  25582095 tgttctgaattaggtttgggagtcttcatgaaagtt 25582130  T

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Target: scaffold1405 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1405
Description:

Target: scaffold1405; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 476
Target Start/End: Complemental strand, 1252 - 1214
Alignment:
Q  438 tgttctgaattaggtttgggagtcttcatgaaagttgta 476  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  1252 tgttctgaattaggtttggaagtcttcatgaaagttgta 1214  T

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Target: scaffold0226 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 12097 - 12022
Alignment:
Q  224 agattgtttccaagaaagaagcatcctccagaggtgc-atttctatcatcagcgcttccttcccagccagcatcac 298  Q
    ||||| ||||| |||||||| |||||||||||||| | ||||||||||||||| ||| ||  |||| |||||||||    
T  12097 agattatttcctagaaagaaacatcctccagaggtactatttctatcatcagcactttctgaccagtcagcatcac 12022  T

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