View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_27 (Length: 478)
Name: NF8899_low_27
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 42126203 - 42125758
Alignment:
| Q |
17 |
acaaacatcgcatgtgacactgtgtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaaccaaagtcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42126203 |
acaaacatcgcatgtgacactgtgtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaaccaaagtcg |
42126104 |
T |
|
| Q |
117 |
acatcaaaattttgagtcaaaaatcatgtctataattaataattctccacgagtcacgatatattaaatttataacagaaattgatatttatttattttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42126103 |
acatcaaaattttgagtcaaaaatcatgtctataattaataattgtccacgagtcacgatctattaaatttataacagaaattgatatttatttattttt |
42126004 |
T |
|
| Q |
217 |
tctttggtttcagaatgcagtgttgcttgttaccatgaccaaaaccgagtctgatgctatataccattttcttgggatttatcttgttgcctttgttagt |
316 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42126003 |
tctttggtttcagaatgcagtgttgcttgttactatgaccaaaaccgagtctgatgctatataccattttcttgggatttatcttgttgcctttgttagt |
42125904 |
T |
|
| Q |
317 |
tcccttgctgcagctattacttacttcatgtatacatggttcttccaaaaacctgcttcaatccaaagcttttcatttgtttgcatatgtggtgcctttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42125903 |
tcccttgctgcagctattacttacttcatgtatacatggttcttccaaaaacctgcttcaatccaaagcttttcatttgtttgcatatgtggtgcctttc |
42125804 |
T |
|
| Q |
417 |
attggattccattcactattactgcatatgctaccatgttttctga |
462 |
Q |
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| T |
42125803 |
attggattccattcactattactgcatatgctaccatgttttctga |
42125758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 24929134 - 24929052
Alignment:
| Q |
385 |
cttttcatttgtttgcatatgtggtgcctttcattggattccattcactattactgcatatgctaccatgttttctgatgtcc |
467 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| ||||| || | | |||||||||||||||||||||||| |||| |
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| T |
24929134 |
cttttcatttgtttgcatatgtggtgcttttcactggatcccatttaccgtcattgcatatgctaccatgttttctgaagtcc |
24929052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 33844149 - 33844221
Alignment:
| Q |
40 |
gtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaaccaaa |
112 |
Q |
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| T |
33844149 |
gtttatctctatctctctcttactatttatctcctacaacttaaatgcatttcaaaaatacacaaaaaccaaa |
33844221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 36646827 - 36646749
Alignment:
| Q |
37 |
tgtgtttatctatatctctcttttactttatatcctctacaacttac--agacatttcaaaaatacacaaaaaccaaag |
113 |
Q |
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||||||||||| ||||||||||||||||| || | | |||||||||| ||| ||| ||||||||||||||| ||||| |
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| T |
36646827 |
tgtgtttatctctatctctcttttactttttaccttatacaacttacttagatttttaaaaaatacacaaaaatcaaag |
36646749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 12119911 - 12119845
Alignment:
| Q |
41 |
tttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaa |
107 |
Q |
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||||||||||||||||| ||||||| |||| |||| ||||| | |||||||||||||||||||| |
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| T |
12119911 |
tttatctatatctctctcttactttttatcttctattggttacacatatttcaaaaatacacaaaaa |
12119845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 20809151 - 20809087
Alignment:
| Q |
39 |
tgtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacaca |
103 |
Q |
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|||| |||| ||||||||| ||||||| |||| | |||||| |||| |||||| ||||||||||| |
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| T |
20809151 |
tgttcatctctatctctctcttactttttatcttttacaacatacacacatttaaaaaatacaca |
20809087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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