View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_28 (Length: 476)
Name: NF8899_low_28
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 118 - 289
Target Start/End: Original strand, 16081447 - 16081634
Alignment:
| Q |
118 |
gtgatgtttagcatcattgcctagtttatatgttaaacgaaatacgaccaactatgtctctatttatatattggattgactgtgagtttggcaaaattat |
217 |
Q |
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| T |
16081447 |
gtgatgtttagcatcactgcctagcttatatgttaaacgaaatacaaccaattatgtctctatttatatattggattgaccgtgagtttgacaaaattat |
16081546 |
T |
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| Q |
218 |
agtgag----------------actcctaaatcctaagtataatttagccaaaatcacattaacgcactataaatctgtcaaactcat |
289 |
Q |
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| T |
16081547 |
ggtgagagtgtgattttgtcaaactcctaaatcctaagtataatttagccaaaatcacattaacgcactataaatctgtcaaactcat |
16081634 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 45368919 - 45368976
Alignment:
| Q |
76 |
cattataattagctctc-cgatgcattcactacaatttctatcgtgatgtttagcatc |
132 |
Q |
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||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |
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| T |
45368919 |
cattataattagctcacgcgatgcattcgctacaatttctatcgtgatgtttagcatc |
45368976 |
T |
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