View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_3 (Length: 932)
Name: NF8899_low_3
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_3 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 423 - 914
Target Start/End: Complemental strand, 22416637 - 22416145
Alignment:
| Q |
423 |
gaaagaagaaaatataatttataagcttaaatgctatttgaaacgtctaaaaaataa-gatataagttggtgaaataaactataagctcgtgataacatg |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| ||||||||||||| |
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| T |
22416637 |
gaaagaagaaaatataatttataagcttaaatgctatttgaaacgtctaaaaaacaaagacataagttggtgaaataaactataagttcgtgataacatg |
22416538 |
T |
|
| Q |
522 |
acatttaccaaacattattttttaatcatacaaacttataagctacaagttttannnnnnnaccttgccaaacaggccctaattctccaaaattatcata |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22416537 |
acatttaccaaacattattttttaatcatacaaacttataagctacaagttttatttttttaccttgccaaacaggccctaattctccaaaattatcata |
22416438 |
T |
|
| Q |
622 |
gtaagcgacaactccaaggatctaaaattaagaattaagttgttttggtaagtccaatgcttatttgtgtctccaaacacgacctttattgtagatccat |
721 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22416437 |
gtaagcgacaactccaaggatctaaaattaagaattaagttgttttggtaagtccaatgcttatttgtgtctccaaacacgacctttattgtagatccat |
22416338 |
T |
|
| Q |
722 |
agtacaccttcaaataaacaacaataattgaagtggcaaagaaacgttcatacttgttatgactctaagcatcgaaagtggaaatgaagcccttcactaa |
821 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22416337 |
agtacaccttcaaataaacaacaataattgaagtggcaaagaaacgttcatacttgttatgactctaagcatcgaaagtggaaatgaagcccttcactaa |
22416238 |
T |
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| Q |
822 |
cttaataaatttctttgctttggatggctcaaaaaactcaaccccatgaaaaccttcttcctgaaaatctttgacaacttccacacccttctc |
914 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22416237 |
cttaataaatttctttgctttggatggctcaaaaaactcaaccccatgaaaaccttcttcctgaaaatctttgacaacttccacacccttctc |
22416145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 22417044 - 22416708
Alignment:
| Q |
17 |
agacaccacgaatacaattcagcgaatcgacgaagatgcaaagcaccgacgtcgttttgataccttacaccagaagtgtgggttaagacaaccgtaaaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
22417044 |
agacaccacgaatacaattcagcgaatcgacgaagatgcaaagcaccgacgtcgttttgataccctacacgagaagtgtgggttaagacaaccgtaaaag |
22416945 |
T |
|
| Q |
117 |
gttcaaccaccaaaacaaccgctgctatcattcgaaaacaacgacagaaacggccaatttggatgtgggtggtgcgaagggcagcgcgccactcatcaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22416944 |
gttcaaccaccaaaacaaccgctgctatcattcgaaaacaacgacaaaaacggccgatttggatgtgggtggtgcggagggcagcgcgccactcatcaca |
22416845 |
T |
|
| Q |
217 |
tcaccgcaccggaaggattacatatggtaaggatggagtttggattaaaggggatggaaaaagatg-aggcgcttgtgaagtttagagagaaggcggatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22416844 |
tcaccgcaccggaaggattacatatggtaaggatggagtttggattaaaggggatggaaaaagatgaaggcgcttgtgaagtttagagagaaggcggatg |
22416745 |
T |
|
| Q |
316 |
atattttttaaagagagcccattatcatatcgacttt |
352 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
22416744 |
atattttttaaagagagcccattatcatatcgacttt |
22416708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 716 - 911
Target Start/End: Complemental strand, 22400507 - 22400314
Alignment:
| Q |
716 |
atccatagtacaccttcaaataaacaacaataattgaag-tggcaaagaaacgttcatacttgttatgactctaagcatcgaaagtggaaatgaagccct |
814 |
Q |
| |
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||||||| ||||| |||||||||| | ||||||| ||| | |||||||||||| || || |||| ||| |||||||||||| ||| ||||| || | |
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| T |
22400507 |
atccataatacacgttcaaataaaggaaaataattcaaggtagcaaagaaacgt-caaacatgtt--gaccctaagcatcgaactaggagatgaaacctt |
22400411 |
T |
|
| Q |
815 |
tcactaacttaataaatttctttgctttggatggctcaaaaaactcaaccccatgaaaaccttcttcctgaaaatctttgacaacttccacaccctt |
911 |
Q |
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|||| | || |||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| || || |||||||||||||| |
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| T |
22400410 |
tcaccacctcaataaagttctttgctttggatagctcaaaaaactcaactccatgaaaaccatcttcttgaaaatccttcaccacttccacaccctt |
22400314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 442 - 515
Target Start/End: Original strand, 15131392 - 15131468
Alignment:
| Q |
442 |
tataagcttaaatgctatttgaaa---cgtctaaaaaataagatataagttggtgaaataaactataagctcgtgat |
515 |
Q |
| |
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|||| |||||||||||| |||||| ||||| ||||||||| |||||||| || |||||| |||||||||||||| |
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| T |
15131392 |
tatatgcttaaatgctacttgaaatagcgtctgaaaaataagctataagttagtaaaataagttataagctcgtgat |
15131468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 472 - 516
Target Start/End: Complemental strand, 25146421 - 25146377
Alignment:
| Q |
472 |
aaaaataagatataagttggtgaaataaactataagctcgtgata |
516 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
25146421 |
aaaaataagttataagttggtgaaataagttataagctcgtgata |
25146377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 534
Target Start/End: Original strand, 32627657 - 32627724
Alignment:
| Q |
467 |
gtctaaaaaataagatataagttggtgaaataaactataagctcgtgataacatgacatttaccaaac |
534 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||| |||||| ||||||| | || |||||||| |||| |
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|
| T |
32627657 |
gtcttaaaaataagatataagctcgtgaaataaattataagttcgtgatgaaataacatttactaaac |
32627724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 570
Target Start/End: Original strand, 44984437 - 44984470
Alignment:
| Q |
537 |
tattttttaatcatacaaacttataagctacaag |
570 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
44984437 |
tattttttaatcatacaagcttataagctacaag |
44984470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 473 - 566
Target Start/End: Original strand, 27005885 - 27005979
Alignment:
| Q |
473 |
aaaataagatataagttggtgaaataaactataagctcgtgataacatgacatttaccaaacatta-ttttttaatcatacaaacttataagcta |
566 |
Q |
| |
|
|||||||| |||||| | |||||||| ||||||| ||||||| ||| | |||||||||||| | ||||||||||| |||| ||||||||||| |
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| T |
27005885 |
aaaataagttataagctcttgaaataagctataagttcgtgatggaatgtcgtttaccaaacataatttttttaatcaaacaagcttataagcta |
27005979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 501 - 566
Target Start/End: Original strand, 339072 - 339137
Alignment:
| Q |
501 |
ctataagctcgtgataacatgacatttaccaaacattattttttaatcatacaaacttataagcta |
566 |
Q |
| |
|
|||||||||||||| || |||||| |||||||| || || |||| |||||||| ||||||||||| |
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|
| T |
339072 |
ctataagctcgtgagaaaatgacagttaccaaatgtttttctttagtcatacaagcttataagcta |
339137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 566
Target Start/End: Original strand, 21516721 - 21516786
Alignment:
| Q |
502 |
tataagctcgtgataacatgacatttaccaaacat-tattttttaatcatacaaacttataagcta |
566 |
Q |
| |
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||||||||||||| || |||||| ||||||||||| | ||||||| |||||| | ||||||||||| |
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|
| T |
21516721 |
tataagctcgtgaaaaaatgacaattaccaaacatgtcttttttagtcatacgagcttataagcta |
21516786 |
T |
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Back To:
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