View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8899_low_30 (Length: 471)

Name: NF8899_low_30
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8899_low_30
NF8899_low_30
[»] chr2 (3 HSPs)
chr2 (19-462)||(41387248-41387691)
chr2 (27-237)||(1263139-1263349)
chr2 (383-432)||(11530023-11530072)
[»] scaffold0015 (1 HSPs)
scaffold0015 (27-237)||(67010-67220)
[»] chr7 (2 HSPs)
chr7 (21-237)||(8688664-8688880)
chr7 (24-240)||(37051306-37051522)
[»] chr6 (2 HSPs)
chr6 (21-229)||(60119-60327)
chr6 (373-433)||(21869856-21869916)
[»] chr3 (1 HSPs)
chr3 (27-237)||(43647759-43647969)
[»] chr5 (1 HSPs)
chr5 (373-431)||(41399578-41399636)
[»] chr8 (1 HSPs)
chr8 (392-436)||(2722233-2722277)
[»] chr4 (1 HSPs)
chr4 (298-338)||(49363519-49363559)


Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 41387691 - 41387248
Alignment:
Q  19 aaaaggtatgatgccaaatcttctccatgtcatcccagttactcacaataccatgttcaattggatattttagagtcaatataccacgcttggactgagc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41387691 aaaaggtatgatgccaaatcttctccatgtcatcccagttactcacaataccatgttcaattggatattttagagtcaatataccacgcttggactgagc 41387592  T
Q  119 ttcatcaccaacatatgcatctttttgtcccatgccaaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacacagcccttggagcatca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41387591 ttcatcaccaacatatgcatctttttgtcccatgccaaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacacagcccttggagcatca 41387492  T
Q  219 tctccagcaaatccagcctaaacgttgcaaatcacaatgcaatagtttcacagcaaagtagtagaaagtgagaatcgaagattgcagaaaatagcagttc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41387491 tctccagcaaatccagcctaaacgttgcaaatcacaatgcaatagtttcacagcaaagtagtagaaagtgagaatcgaagattgcagaaaatagcagttc 41387392  T
Q  319 attcaaattcttctatgcaatagtgttattgacttatatagcagctctttaacaacaacatttagtactagatagtgtatcacaaaacaatattgatttg 418  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41387391 attcaaattcttctatgcaatagttttattgacttatatagcagctctttaacaacaacatttagtactagatagtgaatcacaaaacaatattgatttg 41387292  T
Q  419 ttcaaattttgctacattgctataactattatttaacaaacacc 462  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  41387291 ttcaaatttcgctacattgctataactattatttaacaaacacc 41387248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 1263139 - 1263349
Alignment:
Q  27 tgatgccaaatcttctccatgtcatcccagttactcacaataccatgttcaattggatattttagagtcaatataccacgcttggactgagcttcatcac 126  Q
    |||||||||||||| ||||| || ||||||||||| || |||||||| || || ||||| || |  || |  ||||| | ||| ||||||||||||||||    
T  1263139 tgatgccaaatcttttccatatcgtcccagttactaactataccatgctctataggatacttcaacgtgaggatacccctcttagactgagcttcatcac 1263238  T
Q  127 caacatatgcatctttttgtcccatgccaaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacacagcccttggagcatcatctccagc 226  Q
    | ||||| ||||| || || ||||| |||||||| |||||||| || || ||||| |||| ||| || || ||||| ||||| ||||||||||| || ||    
T  1263239 ctacataagcatccttctgacccatcccaaccattacaccggtatgacgaggtcgcccaataatactggggaacacggccctaggagcatcatcgcctgc 1263338  T
Q  227 aaatccagcct 237  Q
    ||| |||||||    
T  1263339 aaaaccagcct 1263349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 11530072 - 11530023
Alignment:
Q  383 gtactagatagtgtatcacaaaacaatattgatttgttcaaattttgcta 432  Q
    |||||| |||||||||| || ||||||| |||||||||||||||| ||||    
T  11530072 gtactaaatagtgtatcgcagaacaatagtgatttgttcaaatttcgcta 11530023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 67220 - 67010
Alignment:
Q  27 tgatgccaaatcttctccatgtcatcccagttactcacaataccatgttcaattggatattttagagtcaatataccacgcttggactgagcttcatcac 126  Q
    |||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |  || || |||||||||||||    
T  67220 tgatgccagatcttttccatatcatcccagttactaacaattccatgctcaattgggtactttagagtcaaaatacccctttttgattgagcttcatcac 67121  T
Q  127 caacatatgcatctttttgtcccatgccaaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacacagcccttggagcatcatctccagc 226  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||||| ||    
T  67120 caacatatgcatccttttgtcccataccaaccatcacaccggtgtggcgtggtcgacctacaatactagggaacaccgcccttggtgcatcatctccggc 67021  T
Q  227 aaatccagcct 237  Q
    |||||||||||    
T  67020 aaatccagcct 67010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 8688880 - 8688664
Alignment:
Q  21 aaggtatgatgccaaatcttctccatgtcatcccagttactcacaataccatgttcaattggatattttagagtcaatataccacgcttggactgagctt 120  Q
    ||||| |||||||||||||| ||||||||||||||||| || || || ||||||||||| || ||||| |||||||| ||||| | ||| ||||| || |    
T  8688880 aaggtgtgatgccaaatcttttccatgtcatcccagttgctaacgattccatgttcaatggggtatttaagagtcaaaatacccctcttagactgtgcct 8688781  T
Q  121 catcaccaacatatgcatctttttgtcccatgccaaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacacagcccttggagcatcatc 220  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||| || || ||||| |||||||| ||||||||||| |  || ||||||||    
T  8688780 catcaccaacatatgcatctttttgacccatgccaaccatcacaccagtgtgacgaggacgacctacaatgctgggaaacacagcacgaggggcatcatc 8688681  T
Q  221 tccagcaaatccagcct 237  Q
    |||||||||||||||||    
T  8688680 tccagcaaatccagcct 8688664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 37051306 - 37051522
Alignment:
Q  24 gtatgatgccaaatcttctccatgtcatcccagttactcacaataccatgttcaattggatattttagagtcaatataccacgcttggactgagcttcat 123  Q
    ||||||||||| ||||||||||| |||||||| ||||| ||||| ||||| |||||||| ||||| |  ||||| ||||| |  || || || |||||||    
T  37051306 gtatgatgccagatcttctccatatcatcccaattactaacaatcccatgctcaattgggtatttcaatgtcaaaatacctctttttgattgtgcttcat 37051405  T
Q  124 caccaacatatgcatctttttgtcccatgccaaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacacagcccttggagcatcatctcc 223  Q
    |||||||||||||||||||||||||||| |||||||| || || ||||| ||||| || || || |||||||| || || |||||||| |||||||||||    
T  37051406 caccaacatatgcatctttttgtcccattccaaccattacccctgtgtgacgtggacgtcctactatgctagggaatactgcccttggtgcatcatctcc 37051505  T
Q  224 agcaaatccagcctaaa 240  Q
     ||||| ||||||||||    
T  37051506 tgcaaaaccagcctaaa 37051522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 60119 - 60327
Alignment:
Q  21 aaggtatgatgccaaatcttctccatgtcatcccagttactcacaataccatgttcaattggatattttagagtcaatataccacgcttggactgagctt 120  Q
    |||||||||||||||||||| |||||||||||||| || || ||||||||||| |||||||| || || ||||| |  |||||||| || || || || |    
T  60119 aaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctcaattgggtacttgagagtgaggataccacgtttagattgtgcct 60218  T
Q  121 catcaccaacatatgcatctttttgtcccatgccaaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacacagcccttggagcatcatc 220  Q
    ||||||||||||||||||||||||| ||||| |||||||| ||||| || || || || |||||||||||||| |||||||| || |  || ||||||||    
T  60219 catcaccaacatatgcatctttttggcccataccaaccataacaccagtatgacgaggacgaccaacaatgctgggaaacacggcacgcggtgcatcatc 60318  T
Q  221 tccagcaaa 229  Q
    |||||||||    
T  60319 tccagcaaa 60327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 433
Target Start/End: Complemental strand, 21869916 - 21869856
Alignment:
Q  373 acaacatttagtactagatagtgtatcacaaaacaatattgatttgttcaaattttgctac 433  Q
    ||||||||| |||||| ||||||||||||  ||||||| |||||||||| |||| ||||||    
T  21869916 acaacattttgtactaaatagtgtatcacggaacaataatgatttgttcgaattctgctac 21869856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 43647759 - 43647969
Alignment:
Q  27 tgatgccaaatcttctccatgtcatcccagttactcacaataccatgttcaattggatattttagagtcaatataccacgcttggactgagcttcatcac 126  Q
    |||||||| |||||||||||||||||||||||||| |||||||| || ||||| || || || ||||| |  ||||| |  || || || ||||| ||||    
T  43647759 tgatgccagatcttctccatgtcatcccagttactgacaataccgtgctcaatggggtacttgagagtaagaatacctctttttgattgggcttcgtcac 43647858  T
Q  127 caacatatgcatctttttgtcccatgccaaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacacagcccttggagcatcatctccagc 226  Q
    ||||||| ||||| ||||| ||||| |||||||| |||||||| || || ||||| |||||||| || |||||||||||||| ||||||||||| |||||    
T  43647859 caacataggcatccttttggcccataccaaccatgacaccggtatgacgaggtcggccaacaatacttggaaacacagccctaggagcatcatcaccagc 43647958  T
Q  227 aaatccagcct 237  Q
    |||||||||||    
T  43647959 aaatccagcct 43647969  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 41399578 - 41399636
Alignment:
Q  373 acaacatttagtactagatagtgtatcacaaaacaatattgatttgttcaaattttgct 431  Q
    ||||||||| |||||| ||||||||||||   ||||||||||||| |||||||||||||    
T  41399578 acaacattttgtactaaatagtgtatcacggcacaatattgatttattcaaattttgct 41399636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 2722233 - 2722277
Alignment:
Q  392 agtgtatcacaaaacaatattgatttgttcaaattttgctacatt 436  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||    
T  2722233 agtgtatcacataacaatattcatttgtttaaattttgctacatt 2722277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 49363559 - 49363519
Alignment:
Q  298 gattgcagaaaatagcagttcattcaaattcttctatgcaa 338  Q
    ||||||||||||||||||||||| |||||||| | ||||||    
T  49363559 gattgcagaaaatagcagttcatccaaattctgcaatgcaa 49363519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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